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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 64"

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Search Summary

This query matches 419 Structures.

Refinements

Structure Determination Methodology

experimental (419)

Scientific Name of Source Organism

	Homo sapiens (117)
	Methanosarcina mazei (26)
	Plasmodium falciparum 3D7 (19)
	Mus musculus (13)
	Rattus norvegicus (13)
	Haemophilus influenzae Rd KW20 (10)
	Escherichia coli (9)
	synthetic construct (9)
	Bos taurus (8)
	Methanosarcina mazei Go1 (8)

More...

Taxonomy

	Eukaryota (213)
	Bacteria (123)
	Archaea (46)
	Riboviria (9)
	other sequences (9)
	Eukaryota (eukaryotes) (4)
	Varidnaviria (3)
	Duplodnaviria (2)
	unclassified sequences (2)
	Monodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (419)

Polymer Entity Type

	Protein (394)
	DNA (27)
	RNA (8)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (15)
	1.5 - 2.0 (93)
	2.0 - 2.5 (175)
	2.5 - 3.0 (94)
	3.0 - 3.5 (31)
	3.5 - 4.0 (8)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (10)
	2000 - 2004 (32)
	2005 - 2009 (71)
	2010 - 2014 (77)
	2015 - 2019 (125)
	2020 - 2024 (94)
	2025 - 2029 (9)

Enzyme Classification Name

	Transferases (75)
	Hydrolases (56)
	Oxidoreductases (48)
	Ligases (47)
	Isomerases (3)
	Lyases (2)

Membrane Protein Annotation

	mpstruc (11)
	PDBTM (4)
	OPM (4)
	MemProtMD (2)

Symmetry Type

	Asymmetric (239)
	Cyclic (154)
	Dihedral (24)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (71)
	All beta proteins (51)
	Alpha and beta proteins (a/b) (54)
	Artifacts (31)
	All alpha proteins (27)
	Small proteins (6)
	Membrane and cell surface proteins and peptides (3)
	Designed proteins (2)

AllSelected

1 to 25 of 419 Structures

Page 1 of 17

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1A6F \| pdb_00001a6f	Download File View File

RNASE P PROTEIN FROM BACILLUS SUBTILIS

Stams, T., Christianson, D.W.

(1998) Science 280: 752-755

Released	1999-03-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus subtilis
Macromolecule	RIBONUCLEASE P PROTEIN (protein)
Unique Ligands	SO4, ZN

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1B0X \| pdb_00001b0x	Download File View File

THE CRYSTAL STRUCTURE OF AN EPH RECEPTOR SAM DOMAIN REVEALS A MECHANISM FOR MODULAR DIMERIZATION.

Stapleton, D., Balan, I., Pawson, T., Sicheri, F.

(1999) Nat Struct Biol 6: 44-49

Released	1999-05-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (EPHA4 RECEPTOR TYROSINE KINASE) (protein)

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1BW8 \| pdb_00001bw8	Download File View File

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM

Owen, D.J., Evans, P.R.

(1998) Science 282: 1327-1332

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN (INTERNALIZATION SIGNAL FROM EGFR) (protein) PROTEIN (MU2 ADAPTIN SUBUNIT) (protein)

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1BWV \| pdb_00001bwv	Download File View File

Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate

Sugawara, H., Yamamoto, H., Shibata, N., Inoue, T., Miyake, C., Yokota, A., Kai, Y.

(1999) J Biological Chem 274: 15655-15661

Released	1999-09-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Galdieria partita
Macromolecule	PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) (protein)
Unique Ligands	CAP, MG

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1BXX \| pdb_00001bxx	Download File View File

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN

Owen, D.J., Evans, P.R.

(1998) Science 282: 1327-1332

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rattus norvegicus synthetic construct
Macromolecule	PROTEIN (AP50) (protein) PROTEIN (TGN38 PEPTIDE) (protein)

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1CGL \| pdb_00001cgl	Download File View File

Structure of the catalytic domain of fibroblast collagenase complexed with an inhibitor

Lovejoy, B., Cleasby, A., Hassell, A.M., Longley, K., Luther, M.A., Weigl, D., Mcgeehan, G., Mcelroy, A.B., Drewry, D., Lambert, M.H., Jordan, S.R.

(1994) Science 263: 375-377

Released	1995-02-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	FIBROBLAST COLLAGENASE (protein)
Unique Ligands	0ED, CA, ZN

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1CM0 \| pdb_00001cm0	Download File View File

CRYSTAL STRUCTURE OF THE PCAF/COENZYME-A COMPLEX

Clements, A., Rojas, J.R., Trievel, R.C., Wang, L., Berger, S.L., Marmorstein, R.

(1999) EMBO J 18: 3521-3532

Released	1999-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	P300/CBP ASSOCIATING FACTOR (protein)
Unique Ligands	COA

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1CWY \| pdb_00001cwy	Download File View File

CRYSTAL STRUCTURE OF AMYLOMALTASE FROM THERMUS AQUATICUS, A GLYCOSYLTRANSFERASE CATALYSING THE PRODUCTION OF LARGE CYCLIC GLUCANS

Przylas, I., Tomoo, K., Terada, Y., Takaha, T., Fuji, K., Saenger, W., Straeter, N.

(2000) J Mol Biology 296: 873-886

Released	2001-02-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus aquaticus
Macromolecule	AMYLOMALTASE (protein)

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1DL8 \| pdb_00001dl8	Download File View File

CRYSTAL STRUCTURE OF 5-F-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2

Adams, A., Guss, J.M., Collyer, C.A., Denny, W.A., Wakelin, L.P.

(2000) Mol Pharmacol 58: 649-658

Released	2000-10-30
Method	X-RAY DIFFRACTION 1.55 Å
Macromolecule	DNA (5'-D(CPGPTPAPCPG)-3') (nucleic acid)
Unique Ligands	DA7

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1ESW \| pdb_00001esw	Download File View File

X-RAY STRUCTURE OF ACARBOSE BOUND TO AMYLOMALTASE FROM THERMUS AQUATICUS. IMPLICATIONS FOR THE SYNTHESIS OF LARGE CYCLIC GLUCANS

Przylas, I., Terada, Y., Fujii, K., Takaha, T., Saenger, W., Straeter, N.

(2000) Eur J Biochem 267: 6903-6913

Released	2001-04-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus aquaticus
Macromolecule	AMYLOMALTASE (protein)
Unique Ligands	EDO
Unique branched monosaccharides	AC1, GLC

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1EUF \| pdb_00001euf	Download File View File

BOVINE DUODENASE(NEW SERINE PROTEASE), CRYSTAL STRUCTURE

Pletnev, V.Z., Zamolodchikova, T.S., Pangborn, W.A., Duax, W.L.

(2000) Proteins 41: 8-16

Released	2001-04-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	DUODENASE (protein)
Unique Ligands	NAG, PO4

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1G2D \| pdb_00001g2d	Download File View File

STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2)

Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., Pabo, C.O.

(2001) Structure 9: 717-723

Released	2001-09-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	TATA BOX ZINC FINGER PROTEIN (protein) 5'-D(GPAPCPGPCPTPAPTPAPAPAPAPGPGPAPG)-3' (nucleic acid) 5'-D(TPCPCPTPTPTPTPAPTPAPGPCPGPTPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1G2F \| pdb_00001g2f	Download File View File

STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6)

Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., Pabo, C.O.

(2001) Structure 9: 717-723

Released	2001-09-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	TATA BOX ZINC FINGER PROTEIN (protein) 5'-D(GPAPCPGPCPTPAPTPAPAPAPAPGPGPAPG)-3' (nucleic acid) 5'-D(TPCPCPTPTPTPTPAPTPAPGPCPGPTPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1GL3 \| pdb_00001gl3	Download File View File

ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE IN COMPLEX WITH NADP AND SUBSTRATE ANALOGUE S-METHYL CYSTEINE SULFOXIDE

Hadfield, A.T., Kryger, G., Ouyang, J., Ringe, D., Petsko, G.A., Viola, R.E.

(2001) Biochemistry 40: 14475

Released	2001-11-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE-SEMIALDEHYDE DEHYDROGENASE (protein)
Unique Ligands	CYS, NDP

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1H4U \| pdb_00001h4u	Download File View File

Domain G2 of mouse nidogen-1

Hopf, M., Gohring, W., Ries, A., Timpl, R., Hohenester, E.

(2001) Nat Struct Biol 8: 634

Released	2001-06-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	NIDOGEN-1 (protein)

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1H6E \| pdb_00001h6e	Download File View File

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH CTLA-4 INTERNALIZATION PEPTIDE TTGVYVKMPPT

Rowsell, S., Pauptit, R.A.

(2001) Biochem J 359: 427

Released	2001-11-28
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens
Macromolecule	CLATHRIN COAT ASSEMBLY PROTEIN AP50 (protein) CYTOTOXIC T-LYMPHOCYTE PROTEIN 4 (protein)

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1HES \| pdb_00001hes	Download File View File

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH P-selectin INTERNALIZATION PEPTIDE SHLGTYGVFTNAA

Owen, D.J., Evans, P.R., Green, S.A.

(2001) Traffic 2: 105

Released	2001-05-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	CLATHRIN COAT ASSEMBLY PROTEIN AP50 (protein) P-SELECTIN PEPTIDE (protein)

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1I31 \| pdb_00001i31	Download File View File

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 CLATHRIN ADAPTOR, COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM AT 2.5 A RESOLUTION

Modis, Y., Boll, W., Rapoport, I., Kirchhausen, T.

To be published

Released	2001-02-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	CLATHRIN COAT ASSEMBLY PROTEIN AP50 (protein) EPIDERMAL GROWTH FACTOR RECEPTOR (protein)

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1IV5 \| pdb_00001iv5	Download File View File

New Crystal Form of Human CD81 Large Extracellular Loop.

Kitadokoro, K., Bolognesi, M., Grandi, G., Marco, P., Galli, G., Petracca, R., Fabiana, F.

(2002) Biol Chem 383: 1447-1452

Released	2003-01-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CD81 antigen (protein)

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1K9G \| pdb_00001k9g	Download File View File

Crystal Structure of the Complex of Cryptolepine-d(CCTAGG)2

Lisgarten, J.N., Coll, M., Portugal, J., Wright, C.W., Aymami, J.

(2002) Nat Struct Biol 9: 57-60

Released	2001-11-30
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	5'-D(CPCPTPAPGPG)-3' (nucleic acid)
Unique Ligands	DR1

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1KCI \| pdb_00001kci	Download File View File

Crystal Structure of 9-amino-N-[2-(4-morpholinyl)ethyl]-4-acridinecarboxamide Bound to d(CGTACG)2

Adams, A., Guss, J.M., Denny, W.A., Wakelin, L.P.G.

(2002) Nucleic Acids Res 30: 719-725

Released	2002-02-01
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	5'-D(CPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	DRC

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1M69 \| pdb_00001m69	Download File View File

Atomic Resolution Structure of 5Br-9amino-DACA with d[CGTACG]2

Teixeira, S.C.M., Thorpe, J.H., Todd, A.K., Cardin, C.J.

To be published

Released	2003-08-19
Method	X-RAY DIFFRACTION 1.1 Å
Macromolecule	5'-D(CPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	DAX, SPM

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1MD7 \| pdb_00001md7	Download File View File

Monomeric structure of the zymogen of complement protease C1r

Budayova-Spano, M., Grabarse, W., Thielens, N.M., Hillen, H., Lacroix, M., Schmidt, M., Fontecilla-Camps, J., Arlaud, G.J., Gaboriaud, C.

(2002) Structure 10: 1509-1519

Released	2003-08-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	C1R COMPLEMENT SERINE PROTEASE (protein)
Unique Ligands	NAG

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1MW5 \| pdb_00001mw5	Download File View File

Structure of HI1480 from Haemophilus influenzae

Lim, K., Sarikaya, E., Howard, A., Galkin, A., Herzberg, O., Structure 2 Function Project (S2F)

(2004) Proteins 56: 564-571

Released	2003-11-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI1480 (protein)

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1NPD \| pdb_00001npd	Download File View File

X-RAY STRUCTURE OF SHIKIMATE DEHYDROGENASE COMPLEXED WITH NAD+ FROM E.COLI (YDIB) NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESG) TARGET ER24

Benach, J., Kuzin, A.P., Lee, I., Rost, B., Chiang, Y., Acton, T.B., Montelione, G.T., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

(2003) J Biological Chem 278: 19176-19182

Released	2003-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB (protein)
Unique Ligands	NAD

1 to 25 of 419 Structures

Page 1 of 17

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A6F | pdb_00001a6f

1B0X | pdb_00001b0x

1BW8 | pdb_00001bw8

1BWV | pdb_00001bwv

1BXX | pdb_00001bxx

1CGL | pdb_00001cgl

1CM0 | pdb_00001cm0

1CWY | pdb_00001cwy

1DL8 | pdb_00001dl8

1ESW | pdb_00001esw

1EUF | pdb_00001euf

1G2D | pdb_00001g2d

1G2F | pdb_00001g2f

1GL3 | pdb_00001gl3

1H4U | pdb_00001h4u

1H6E | pdb_00001h6e

1HES | pdb_00001hes

1I31 | pdb_00001i31

1IV5 | pdb_00001iv5

1K9G | pdb_00001k9g

1KCI | pdb_00001kci

1M69 | pdb_00001m69

1MD7 | pdb_00001md7

1MW5 | pdb_00001mw5

1NPD | pdb_00001npd