RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Keywords HAS EXACT PHRASE "VIRUS"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 2,063 Structures.

Refinements

Structure Determination Methodology

experimental (2,063)

Scientific Name of Source Organism

	Homo sapiens (198)
	Mus musculus (100)
	Enterovirus A71 (57)
	rhinovirus B14 (44)
	enterovirus D68 (43)
	Human poliovirus 1 Mahoney (37)
	Escherichia phage MS2 (34)
	Coxsackievirus B1 (30)
	Human immunodeficiency virus 1 (27)
	Severe acute respiratory syndrome coronavirus 2 (27)

More...

Taxonomy

	Riboviria (1,318)
	Eukaryota (395)
	Monodnaviria (273)
	Duplodnaviria (243)
	Bacteria (115)
	Varidnaviria (44)
	other sequences (22)
	Viruses incertae sedis (16)
	Adnaviria (7)
	unclassified sequences (7)

More...

Experimental Method

	ELECTRON MICROSCOPY (1,557)
	X-RAY DIFFRACTION (473)
	FIBER DIFFRACTION (25)
	SOLUTION NMR (6)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (2,056)
	RNA (114)
	DNA (37)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (34)
	2.0 - 2.5 (141)
	2.5 - 3.0 (416)
	3.0 - 3.5 (578)
	3.5 - 4.0 (386)
	4.0 - 4.5 (152)
	> 4.5 (336)

Release Date

	1980 - 1984 (1)
	1985 - 1989 (5)
	1990 - 1994 (41)
	1995 - 1999 (86)
	2000 - 2004 (91)
	2005 - 2009 (114)
	2010 - 2014 (188)
	2015 - 2019 (415)
	2020 - 2024 (1,046)
	2025 - 2029 (76)

Enzyme Classification Name

	Hydrolases (205)
	Transferases (117)
	Oxidoreductases (3)
	Isomerases (1)

Membrane Protein Annotation

	OPM (41)
	MemProtMD (24)
	PDBTM (10)
	mpstruc (11)

Symmetry Type

	Icosahedral (1,491)
	Cyclic (233)
	Asymmetric (222)
	Helical (87)
	Dihedral (16)
	Octahedral (5)
	Tetrahedral (4)

SCOP Classification

	All beta proteins (345)
	Alpha and beta proteins (a+b) (55)
	Low resolution protein structures (25)
	All alpha proteins (25)
	Coiled coil proteins (21)
	Membrane and cell surface proteins and peptides (4)
	Artifacts (11)
	Multi-domain proteins (alpha and beta) (4)
	Small proteins (7)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 2,063 Structures

Page 1 of 83

Sort by

Explore in 3D

1A6C \| pdb_00001a6c	Download File View File

STRUCTURE OF TOBACCO RINGSPOT VIRUS

Johnson, J.E., Chandrasekar, V.

(1998) Structure 6: 157-171

Released	1998-07-15
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Tobacco ringspot virus
Macromolecule	TOBACCO RINGSPOT VIRUS CAPSID PROTEIN (protein)

Explore in 3D

1AL0 \| pdb_00001al0	Download File View File

PROCAPSID OF BACTERIOPHAGE PHIX174

Rossmann, M.G., Dokland, T.

(1997) Nature 389: 308-313

Released	1998-01-28
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	CAPSID PROTEIN GPF (protein) SCAFFOLDING PROTEIN GPB (protein) SCAFFOLDING PROTEIN GPD (protein) SPIKE PROTEIN GPG (protein)

Explore in 3D

1AL2 \| pdb_00001al2	Download File View File

P1/MAHONEY POLIOVIRUS, SINGLE SITE MUTANT V1160I

Wien, M.W., Curry, S., Filman, D.J., Hogle, J.M.

(1997) Nat Struct Biol 4: 666-674

Released	1997-11-19
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	P1/MAHONEY POLIOVIRUS (protein)
Unique Ligands	MYR, SPH

Explore in 3D

1AR6 \| pdb_00001ar6	Download File View File

P1/MAHONEY POLIOVIRUS, DOUBLE MUTANT V1160I +P1095S

Wien, M.W., Curry, S., Filman, D.J., Hogle, J.M.

(1997) Nat Struct Biol 4: 666-674

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	P1/MAHONEY POLIOVIRUS (protein)
Unique Ligands	MYR, SPH

Explore in 3D

1AR7 \| pdb_00001ar7	Download File View File

P1/MAHONEY POLIOVIRUS, DOUBLE MUTANT P1095S + H2142Y

Wien, M.W., Curry, S., Filman, D.J., Hogle, J.M.

(1997) Nat Struct Biol 4: 666-674

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	P1/MAHONEY POLIOVIRUS (protein)
Unique Ligands	MYR, SPH

Explore in 3D

1AR8 \| pdb_00001ar8	Download File View File

P1/MAHONEY POLIOVIRUS, MUTANT P1095S

Wien, M.W., Curry, S., Filman, D.J., Hogle, J.M.

(1997) Nat Struct Biol 4: 666-674

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	P1/MAHONEY POLIOVIRUS (protein)
Unique Ligands	MYR, SPH

Explore in 3D

1AR9 \| pdb_00001ar9	Download File View File

P1/MAHONEY POLIOVIRUS, SINGLE SITE MUTANT H2142Y

Wien, M.W., Curry, S., Filman, D.J., Hogle, J.M.

(1997) Nat Struct Biol 4: 666-674

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	P1/MAHONEY POLIOVIRUS (protein)
Unique Ligands	MYR, SPH

Explore in 3D

1ASJ \| pdb_00001asj	Download File View File

P1/MAHONEY POLIOVIRUS, AT CRYOGENIC TEMPERATURE

Wien, M.W., Curry, S., Filman, D.J., Hogle, J.M.

(1997) Nat Struct Biol 4: 666-674

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	P1/MAHONEY POLIOVIRUS (protein)
Unique Ligands	MYR, SPH

Explore in 3D

1AUY \| pdb_00001auy	Download File View File

TURNIP YELLOW MOSAIC VIRUS

Canady, M.A., Larson, S.B., Day, J., McPherson, A.

(1996) Nat Struct Biol 3: 771-781

Released	1998-03-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Turnip yellow mosaic virus
Macromolecule	TURNIP YELLOW MOSAIC VIRUS (protein)

Explore in 3D

1AYM \| pdb_00001aym	Download File View File

HUMAN RHINOVIRUS 16 COAT PROTEIN AT HIGH RESOLUTION

Hadfield, A.T., Rossmann, M.G.

(1997) Structure 5: 427-441

Released	1998-01-21
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Human rhinovirus sp.
Macromolecule	HUMAN RHINOVIRUS 16 COAT PROTEIN (protein)
Unique Ligands	DAO, MYR, ZN

Explore in 3D

1AYN \| pdb_00001ayn	Download File View File

HUMAN RHINOVIRUS 16 COAT PROTEIN

Hadfield, A.T., Oliveira, M.A., Zhao, R., Rossmann, M.G.

(1993) Structure 1: 51-68

Released	1998-01-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human rhinovirus sp.
Macromolecule	HUMAN RHINOVIRUS 16 COAT PROTEIN (protein)
Unique Ligands	DAO, MYR, ZN

Explore in 3D

1B35 \| pdb_00001b35	Download File View File

CRICKET PARALYSIS VIRUS (CRPV)

Tate, J.G., Liljas, L., Scotti, P.D., Christian, P.D., Lin, T.W., Johnson, J.E.

(1999) Nat Struct Biol 6: 765-774

Released	1999-08-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Cricket paralysis virus
Macromolecule	PROTEIN (CRICKET PARALYSIS VIRUS, VP1) (protein) PROTEIN (CRICKET PARALYSIS VIRUS, VP2) (protein) PROTEIN (CRICKET PARALYSIS VIRUS, VP3) (protein) PROTEIN (CRICKET PARALYSIS VIRUS, VP4) (protein)

Explore in 3D

1BBT \| pdb_00001bbt	Download File View File

METHODS USED IN THE STRUCTURE DETERMINATION OF FOOT AND MOUTH DISEASE VIRUS

Acharya, K.R., Fry, E.E., Logan, D.T., Stuart, D.I.

(1993) Acta Crystallogr A 49: 45-55

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Foot-and-mouth disease virus
Macromolecule	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) (protein) FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) (protein) FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) (protein) FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) (protein)

Explore in 3D

1BEV \| pdb_00001bev	Download File View File

BOVINE ENTEROVIRUS VG-5-27

Smyth, M., Tate, J., Lyons, C., Hoey, E., Martin, S., Stuart, D.

(1995) Nat Struct Biol 2: 224-231

Released	1998-09-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bovine enterovirus strain VG-5-27
Macromolecule	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 (protein)
Unique Ligands	MYR, SO4

Explore in 3D

1BMS \| pdb_00001bms	Download File View File

CRYSTAL STRUCTURE OF MS2 CAPSIDS WITH MUTATIONS IN THE SUBUNIT FG LOOP

Liljas, L., Stonehouse, N.J.

(1996) J Mol Biology 256: 330-339

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia phage MS2
Macromolecule	BACTERIOPHAGE MS2 CAPSID (protein)

Explore in 3D

1C8D \| pdb_00001c8d	Download File View File

CANINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Canine parvovirus
Macromolecule	CANINE PARVOVIRUS CAPSID (protein)
Unique Ligands	CA

Explore in 3D

1C8E \| pdb_00001c8e	Download File View File

FELINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Feline parvovirus
Macromolecule	FELINE PANLEUKOPENIA VIRUS CAPSID (protein)

Explore in 3D

1C8F \| pdb_00001c8f	Download File View File

FELINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Feline panleukopenia virus
Macromolecule	FELINE PANLEUKOPENIA VIRUS CAPSID (protein)
Unique Ligands	CA

Explore in 3D

1C8G \| pdb_00001c8g	Download File View File

FELINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Feline panleukopenia virus
Macromolecule	FELINE PANLEUKOPENIA VIRUS CAPSID (protein)
Unique Ligands	CA

Explore in 3D

1C8H \| pdb_00001c8h	Download File View File

CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Canine parvovirus
Macromolecule	CANINE PARVOVIRUS CAPSID (protein)
Unique Ligands	CA

Explore in 3D

1C8M \| pdb_00001c8m	Download File View File

REFINED CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS 16 COMPLEXED WITH VP63843 (PLECONARIL), AN ANTI-PICORNAVIRAL DRUG CURRENTLY IN CLINICAL TRIALS

Chakravarty, S., Bator, C.M., Pevear, D.C., Diana, G.D., Rossmann, M.G.

To be published

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	rhinovirus A16
Macromolecule	HUMAN RHINOVIRUS 16 COAT PROTEIN (protein)
Unique Ligands	W11, ZN

Explore in 3D

1C8N \| pdb_00001c8n	Download File View File

TOBACCO NECROSIS VIRUS

Oda, Y., Fukuyama, K.

(2000) J Mol Biology 300: 153-169

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	unidentified tobacco necrosis virus
Macromolecule	COAT PROTEIN (protein)
Unique Ligands	CA

Explore in 3D

1CD3 \| pdb_00001cd3	Download File View File

PROCAPSID OF BACTERIOPHAGE PHIX174

Rossmann, M.G., Dokland, T.

(1999) J Mol Biology 288: 595-608

Released	1999-04-14
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	PROTEIN (CAPSID PROTEIN GPF) (protein) PROTEIN (SCAFFOLDING PROTEIN GPB) (protein) PROTEIN (SCAFFOLDING PROTEIN GPD) (protein) PROTEIN (SPIKE PROTEIN GPG) (protein)

Explore in 3D

1CGM \| pdb_00001cgm	Download File View File

STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES

Wang, H., Stubbs, G.

(1994) J Mol Biology 239: 371-384

Released	1994-04-30
Method	FIBER DIFFRACTION 3.4 Å
Organisms	Cucumber green mottle mosaic virus
Macromolecule	CUCUMBER GREEN MOTTLE MOSAIC VIRUS (protein) RNA (5'-R(PGPAP*A)-3') (nucleic acid)