RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: PubMed ID = 39484741

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Burkholderia thailandensis (4)
	Pectobacterium atrosepticum (3)
	Deinococcus radiodurans (1)

Taxonomy

Bacteria (8)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

	Protein (8)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

2020 - 2024 (8)

Symmetry Type

Cyclic (8)

AllSelected

1 to 8 of 8 Structures

Page 1 of 1

Sort by

Explore in 3D

8YLF \| pdb_00008ylf	Download File View File

Crystal structure of Burkholderia thailandensis MftR

Song, W.S., Yoon, S.I.

(2024) Nucleic Acids Res 52: 13192-13205

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Burkholderia thailandensis
Macromolecule	MarR family transcriptional regulator (protein)

Explore in 3D

8YLG \| pdb_00008ylg	Download File View File

Crystal structure of Burkholderia thailandensis MftR in complex with operator DNA

Song, W.S., Yoon, S.I.

(2024) Nucleic Acids Res 52: 13192-13205

Released	2024-11-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Burkholderia thailandensis
Macromolecule	MarR family transcriptional regulator (protein) DNA (28-MER) (nucleic acid)

Explore in 3D

8YLH \| pdb_00008ylh	Download File View File

Crystal structure of Pectobacterium atrosepticum PecS

Song, W.S., Yoon, S.I.

(2024) Nucleic Acids Res 52: 13192-13205

Released	2024-11-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Pectobacterium atrosepticum
Macromolecule	Regulatory protein (protein)
Unique Ligands	CL

Explore in 3D

8YLI \| pdb_00008yli	Download File View File

Crystal structure of Pectobacterium atrosepticum PecS in complex with operator DNA

Song, W.S., Yoon, S.I.

(2024) Nucleic Acids Res 52: 13192-13205

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pectobacterium atrosepticum
Macromolecule	Regulatory protein (protein) DNA (28-MER) (nucleic acid)

Explore in 3D

8YLJ \| pdb_00008ylj	Download File View File

Crystal structure of Pectobacterium atrosepticum PecS in complex with uric acid

Song, W.S., Yoon, S.I.

(2024) Nucleic Acids Res 52: 13192-13205

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pectobacterium atrosepticum
Macromolecule	Regulatory protein (protein)
Unique Ligands	URC

Explore in 3D

8YLK \| pdb_00008ylk	Download File View File

Crystal structure of Burkholderia thailandensis MftR in complex with uric acid

Song, W.S., Yoon, S.I.

(2024) Nucleic Acids Res 52: 13192-13205

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia thailandensis
Macromolecule	MarR family transcriptional regulator (protein)
Unique Ligands	URC

Explore in 3D

8YLL \| pdb_00008yll	Download File View File

Crystal structure of Burkholderia thailandensis MftR in complex with xanthine

Song, W.S., Yoon, S.I.

(2024) Nucleic Acids Res 52: 13192-13205

Released	2024-11-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Burkholderia thailandensis
Macromolecule	MarR family transcriptional regulator (protein)
Unique Ligands	XAN

Explore in 3D

8YLM \| pdb_00008ylm	Download File View File

Crystal structure of Deinococcus radiodurans HucR in complex with uric acid

Song, W.S., Yoon, S.I.

(2024) Nucleic Acids Res 52: 13192-13205

Released	2024-11-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Deinococcus radiodurans
Macromolecule	Transcriptional regulator, MarR family (protein)
Unique Ligands	URC

1 to 8 of 8 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

8YLF | pdb_00008ylf

Crystal structure of Burkholderia thailandensis MftR

8YLG | pdb_00008ylg

Crystal structure of Burkholderia thailandensis MftR in complex with operator DNA

8YLH | pdb_00008ylh

Crystal structure of Pectobacterium atrosepticum PecS

8YLI | pdb_00008yli

Crystal structure of Pectobacterium atrosepticum PecS in complex with operator DNA

8YLJ | pdb_00008ylj

Crystal structure of Pectobacterium atrosepticum PecS in complex with uric acid

8YLK | pdb_00008ylk

Crystal structure of Burkholderia thailandensis MftR in complex with uric acid

8YLL | pdb_00008yll

Crystal structure of Burkholderia thailandensis MftR in complex with xanthine

8YLM | pdb_00008ylm

Crystal structure of Deinococcus radiodurans HucR in complex with uric acid

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

8YLF | pdb_00008ylf

8YLG | pdb_00008ylg

8YLH | pdb_00008ylh

8YLI | pdb_00008yli

8YLJ | pdb_00008ylj

8YLK | pdb_00008ylk

8YLL | pdb_00008yll

8YLM | pdb_00008ylm