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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Sinsheimervirus phiX174"

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This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Sinsheimervirus phiX174 (8)
	Escherichia coli K-12 (1)
	Escherichia phage alpha3 (1)
	Escherichia phage phiX174 (1)

Taxonomy

	Monodnaviria (9)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (7)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (9)
	DNA (2)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (4)
	> 4.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (3)
	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (2)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (2)
	Isomerases (1)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Icosahedral (5)
	Cyclic (3)
	Asymmetric (1)

SCOP Classification

	All alpha proteins (3)
	All beta proteins (5)

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1 to 9 of 9 Structures

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1AL0 \| pdb_00001al0	Download File View File

PROCAPSID OF BACTERIOPHAGE PHIX174

Rossmann, M.G., Dokland, T.

(1997) Nature 389: 308-313

Released	1998-01-28
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	CAPSID PROTEIN GPF (protein) SCAFFOLDING PROTEIN GPB (protein) SCAFFOLDING PROTEIN GPD (protein) SPIKE PROTEIN GPG (protein)

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1CD3 \| pdb_00001cd3	Download File View File

PROCAPSID OF BACTERIOPHAGE PHIX174

Rossmann, M.G., Dokland, T.

(1999) J Mol Biology 288: 595-608

Released	1999-04-14
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	PROTEIN (CAPSID PROTEIN GPF) (protein) PROTEIN (SCAFFOLDING PROTEIN GPB) (protein) PROTEIN (SCAFFOLDING PROTEIN GPD) (protein) PROTEIN (SPIKE PROTEIN GPG) (protein)

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1KVP \| pdb_00001kvp	Download File View File

STRUCTURAL ANALYSIS OF THE SPIROPLASMA VIRUS, SPV4, IMPLICATIONS FOR EVOLUTIONARY VARIATION TO OBTAIN HOST DIVERSITY AMONG THE MICROVIRIDAE, ELECTRON MICROSCOPY, ALPHA CARBONS ONLY

McKenna, R.

(1998) Structure 6: 135-145

Released	1999-02-23
Method	ELECTRON MICROSCOPY 27 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	SPV4 CAPSID PROTEIN VP1 (protein)

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1RB8 \| pdb_00001rb8	Download File View File

The phiX174 DNA binding protein J in two different capsid environments.

Bernal, R.A., Hafenstein, S., Esmeralda, R., Fane, B.A., Rossmann, M.G.

(2004) J Mol Biology 337: 1109-1122

Released	2004-04-13
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia phage alpha3 Sinsheimervirus phiX174
Macromolecule	Capsid protein (protein) Major spike protein (protein) Small core protein (protein) DNA (5'-D(PCPAPAPA)-3') (nucleic acid)
Unique Ligands	DC

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1TX9 \| pdb_00001tx9	Download File View File

gpd prior to capsid assembly

Morais, M.C., Fisher, M., Kanamaru, K., Fane, B.A., Rossmann, M.G.

(2004) Mol Cell 15: 991-997

Released	2005-04-26
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	Scaffolding protein D (protein)

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2BPA \| pdb_00002bpa	Download File View File

ATOMIC STRUCTURE OF SINGLE-STRANDED DNA BACTERIOPHAGE PHIX174 AND ITS FUNCTIONAL IMPLICATIONS

McKenna, R., Xia, D., Willingmann, P., Ilag, L.L., Krishnaswamy, S., Rossmann, M.G., Olson, N.H., Baker, T.S., Incardona, N.L.

(1992) Nature 355: 137-143

Released	1991-12-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	PROTEIN (SUBUNIT OF BACTERIOPHAGE PHIX174) (protein) DNA (5'-D(APAPAPAP*C)-3') (nucleic acid)

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4JPN \| pdb_00004jpn	Download File View File

Bacteriophage phiX174 H protein residues 143-221

Sun, L., Young, L.N., Boudko, S.B., Fokine, A., Zhang, X., Rossmann, M.G., Fane, B.A.

(2014) Nature 505: 431-435

Released	2013-12-11
Method	X-RAY DIFFRACTION 2.101 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	Minor spike protein H (protein)

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4JPP \| pdb_00004jpp	Download File View File

Bacteriophage phiX174 H protein residues 143-282

Sun, L., Young, L.N., Boudko, S.B., Fokine, A., Zhang, X., Rossmann, M.G., Fane, B.A.

(2014) Nature 505: 431-435

Released	2013-12-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	Minor spike protein H (protein)

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8G02 \| pdb_00008g02	Download File View File

YES Complex - E. coli MraY, Protein E PhiX174, E. coli SlyD

Orta, A.K., Clemons, W.M., Li, Y.E.

(2023) Science 381: eadg9091-eadg9091

Released	2023-07-26
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Escherichia coli K-12 Escherichia phage phiX174
Macromolecule	Lysis protein E (protein) Peptidyl-prolyl cis-trans isomerase (protein) Phospho-N-acetylmuramoyl-pentapeptide-transferase (protein)

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1AL0 | pdb_00001al0

PROCAPSID OF BACTERIOPHAGE PHIX174

1CD3 | pdb_00001cd3

PROCAPSID OF BACTERIOPHAGE PHIX174

1KVP | pdb_00001kvp

STRUCTURAL ANALYSIS OF THE SPIROPLASMA VIRUS, SPV4, IMPLICATIONS FOR EVOLUTIONARY VARIATION TO OBTAIN HOST DIVERSITY AMONG THE MICROVIRIDAE, ELECTRON MICROSCOPY, ALPHA CARBONS ONLY

1RB8 | pdb_00001rb8

The phiX174 DNA binding protein J in two different capsid environments.

1TX9 | pdb_00001tx9

gpd prior to capsid assembly

2BPA | pdb_00002bpa

ATOMIC STRUCTURE OF SINGLE-STRANDED DNA BACTERIOPHAGE PHIX174 AND ITS FUNCTIONAL IMPLICATIONS

4JPN | pdb_00004jpn

Bacteriophage phiX174 H protein residues 143-221

4JPP | pdb_00004jpp

Bacteriophage phiX174 H protein residues 143-282

8G02 | pdb_00008g02

YES Complex - E. coli MraY, Protein E PhiX174, E. coli SlyD

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AL0 | pdb_00001al0

1CD3 | pdb_00001cd3

1KVP | pdb_00001kvp

1RB8 | pdb_00001rb8

1TX9 | pdb_00001tx9

2BPA | pdb_00002bpa

4JPN | pdb_00004jpn

4JPP | pdb_00004jpp

8G02 | pdb_00008g02