RCSB PDB: Search

3LVG \| pdb_00003lvg	Download File View File

Crystal structure of a clathrin heavy chain and clathrin light chain complex

Wilbur, J.D., Hwang, P.K., Ybe, J.A., Lane, M., Sellers, B.D., Jacobson, M.P., Fletterick, R.J., Brodsky, F.M.

(2010) Dev Cell 18: 841-848

Released	2010-06-09
Method	X-RAY DIFFRACTION 7.94 Å
Organisms	Bos taurus
Macromolecule	Clathrin heavy chain 1 (protein) Clathrin light chain B (protein)

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3LVH \| pdb_00003lvh	Download File View File

Crystal structure of a clathrin heavy chain and clathrin light chain complex

Wilbur, J.D., Hwang, P.K., Ybe, J.A., Lane, M., Sellers, B.D., Jacobson, M.P., Fletterick, R.J., Brodsky, F.M.

(2010) Dev Cell 18: 841-848

Released	2010-06-09
Method	X-RAY DIFFRACTION 9 Å
Organisms	Bos taurus
Macromolecule	Clathrin heavy chain 1 (protein) Clathrin light chain B (protein)

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4MCO \| pdb_00004mco	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax ferrireducens (Rfer_1840), target EFI-510211, with bound malonate

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Zhao, S., Stead, M., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-09-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Rhodoferax ferrireducens T118
Macromolecule	TRAP dicarboxylate transporter-DctP subunit (protein)
Unique Ligands	EPE, MLI

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4MEV \| pdb_00004mev	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax ferrireducens (Rfer_1840), Target EFI-510211, with bound malonate, space group I422

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Zhao, S., Stead, M., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-09-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodoferax ferrireducens T118
Macromolecule	TRAP dicarboxylate transporter-DctP subunit (protein)
Unique Ligands	CIT, MLI

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4MHF \| pdb_00004mhf	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Glucuronate, space group P21

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Zhao, S., Stead, M., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-09-18
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Polaromonas sp. JS666
Macromolecule	TRAP dicarboxylate transporter, DctP subunit (protein)
Unique Ligands	BDP, GCU

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4MIJ \| pdb_00004mij	Download File View File

Crystal structure of a Trap periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Galacturonate, space group P21

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Zhao, S., Stead, M., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-09-18
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Polaromonas sp. JS666
Macromolecule	TRAP dicarboxylate transporter, DctP subunit (protein)
Unique Ligands	ADA, CL, EDO, GTR

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4MNC \| pdb_00004mnc	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_4736), Target EFI-510156, with bound benzoyl formate, space group P21

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Zhao, S., Stead, M., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-09-25
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Polaromonas sp. JS666
Macromolecule	TRAP dicarboxylate transporter-DctP subunit (protein)
Unique Ligands	173, SO4

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4MNI \| pdb_00004mni	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_4736), Target EFI-510156, with bound benzoyl formate, space group P6522

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Zhao, S., Stead, M., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-09-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Polaromonas sp. JS666
Macromolecule	TRAP dicarboxylate transporter-DctP subunit (protein)
Unique Ligands	173

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4MX6 \| pdb_00004mx6	Download File View File

Crystal structure of a trap periplasmic solute binding protein from shewanella oneidensis (SO_3134), target EFI-510275, with bound succinate

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Zhao, S., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	TRAP-type C4-dicarboxylate:H+ symport system substrate-binding component DctP (protein)
Unique Ligands	CL, SIN

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4N0V \| pdb_00004n0v	Download File View File

Crystal structure of a glutathione S-transferase domain-containing protein (Marinobacter aquaeolei VT8), Target EFI-507332

Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Glenn, A.S., Chowdhury, S., Evans, B., Zhao, S.C., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Marinobacter nauticus VT8
Macromolecule	Glutathione S-transferase, N-terminal domain (protein)

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4N15 \| pdb_00004n15	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Burkholderia ambifaria (BAM_6123), Target EFI-510059, with bound beta-D-glucuronate

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Zhao, S., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.651 Å
Organisms	Burkholderia ambifaria AMMD
Macromolecule	TRAP dicarboxylate transporter, DctP subunit (protein)
Unique Ligands	BDP, MG

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4N17 \| pdb_00004n17	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Burkholderia ambifaria (BAM_6123), Target EFI-510059, With bound beta-D-galacturonate

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Zhao, S., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.501 Å
Organisms	Burkholderia ambifaria AMMD
Macromolecule	TRAP dicarboxylate transporter, DctP subunit (protein)
Unique Ligands	CA, CL, GTR

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4N4U \| pdb_00004n4u	Download File View File

Crystal structure of ABC transporter solute binding protein BB0719 from Bordetella bronchiseptica RB50, TARGET EFI-510049

Patskovsky, Y., Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N., Stead, M., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-10-23
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Putative ABC transporter periplasmic solute-binding protein (protein)
Unique Ligands	GOL

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4NAV \| pdb_00004nav	Download File View File

Crystal structure of hypothetical protein XCC2798 from Xanthomonas campestris, Target EFI-508608

Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Glenn, A.S., Chowdhury, S., Evans, B., Zhao, S.C., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	HYPOTHETICAL PROTEIN XCC279 (protein)

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6DDA \| pdb_00006dda	Download File View File

Nurr1 Covalently Modified by a Dopamine Metabolite

Bruning, J.M., Wang, Y., Otrabella, F., Boxue, T., Liu, H., Bhattacharya, P., Guo, S., Holton, J.M., Fletterick, R.J., Jacobson, M.P., England, P.M.

(2019) Cell Chem Biol 26: 674-685.e6

Released	2019-03-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 4 group A member 2 (protein)
Unique Ligands	BR, G7J, K

3LVG | pdb_00003lvg

Crystal structure of a clathrin heavy chain and clathrin light chain complex

3LVH | pdb_00003lvh

Crystal structure of a clathrin heavy chain and clathrin light chain complex

4MCO | pdb_00004mco

Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax ferrireducens (Rfer_1840), target EFI-510211, with bound malonate

4MEV | pdb_00004mev

Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax ferrireducens (Rfer_1840), Target EFI-510211, with bound malonate, space group I422

4MHF | pdb_00004mhf

Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Glucuronate, space group P21

4MIJ | pdb_00004mij

Crystal structure of a Trap periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Galacturonate, space group P21

4MNC | pdb_00004mnc

Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_4736), Target EFI-510156, with bound benzoyl formate, space group P21

4MNI | pdb_00004mni

Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_4736), Target EFI-510156, with bound benzoyl formate, space group P6522

4MX6 | pdb_00004mx6

Crystal structure of a trap periplasmic solute binding protein from shewanella oneidensis (SO_3134), target EFI-510275, with bound succinate

4N0V | pdb_00004n0v

Crystal structure of a glutathione S-transferase domain-containing protein (Marinobacter aquaeolei VT8), Target EFI-507332

4N15 | pdb_00004n15

Crystal structure of a TRAP periplasmic solute binding protein from Burkholderia ambifaria (BAM_6123), Target EFI-510059, with bound beta-D-glucuronate

4N17 | pdb_00004n17

Crystal structure of a TRAP periplasmic solute binding protein from Burkholderia ambifaria (BAM_6123), Target EFI-510059, With bound beta-D-galacturonate

4N4U | pdb_00004n4u

Crystal structure of ABC transporter solute binding protein BB0719 from Bordetella bronchiseptica RB50, TARGET EFI-510049

4NAV | pdb_00004nav

Crystal structure of hypothetical protein XCC2798 from Xanthomonas campestris, Target EFI-508608

6DDA | pdb_00006dda

Nurr1 Covalently Modified by a Dopamine Metabolite

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3LVG | pdb_00003lvg

3LVH | pdb_00003lvh

4MCO | pdb_00004mco

4MEV | pdb_00004mev

4MHF | pdb_00004mhf

4MIJ | pdb_00004mij

4MNC | pdb_00004mnc

4MNI | pdb_00004mni

4MX6 | pdb_00004mx6

4N0V | pdb_00004n0v

4N15 | pdb_00004n15

4N17 | pdb_00004n17

4N4U | pdb_00004n4u

4NAV | pdb_00004nav

6DDA | pdb_00006dda