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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Cereibacter sphaeroides"

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Search Summary

This query matches 320 Structures.

Refinements

Structure Determination Methodology

experimental (320)

Scientific Name of Source Organism

	Cereibacter sphaeroides (225)
	Cereibacter sphaeroides 2.4.1 (77)
	Cereibacter sphaeroides ATCC 17025 (16)
	Cereibacter sphaeroides ATCC 17029 (3)
	Cereibacter sphaeroides f. sp. denitrificans (2)
	Cereibacter sphaeroides KD131 (1)
	synthetic construct (1)

Taxonomy

	Bacteria (320)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (288)
	ELECTRON MICROSCOPY (20)
	SOLUTION NMR (12)

Polymer Entity Type

	Protein (320)
	DNA (8)
	RNA (8)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (45)
	2.0 - 2.5 (92)
	2.5 - 3.0 (111)
	3.0 - 3.5 (34)
	3.5 - 4.0 (8)
	4.0 - 4.5 (1)
	> 4.5 (4)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (10)
	2000 - 2004 (50)
	2005 - 2009 (93)
	2010 - 2014 (69)
	2015 - 2019 (30)
	2020 - 2024 (64)

Enzyme Classification Name

	Oxidoreductases (49)
	Translocases (32)
	Lyases (10)
	Transferases (18)
	Hydrolases (10)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (176)
	MemProtMD (150)
	OPM (39)
	mpstruc (30)

Symmetry Type

	Asymmetric (234)
	Cyclic (81)
	Dihedral (22)
	Octahedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (111)
	All beta proteins (118)
	Alpha and beta proteins (a/b) (29)
	Artifacts (23)
	All alpha proteins (14)
	Alpha and beta proteins (a+b) (6)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 320 Structures

Page 1 of 13

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1A7J \| pdb_00001a7j	Download File View File

PHOSPHORIBULOKINASE FROM RHODOBACTER SPHEROIDES

Harrison, D.H.T., Runquist, J., Holub, A., Miziorko, H.

(1998) Biochemistry 37: 5074-5085

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOSPHORIBULOKINASE (protein)
Unique Ligands	SO4

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1AIG \| pdb_00001aig	Download File View File

PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE D+QB-CHARGE SEPARATED STATE

Stowell, M.H.B., Mcphillips, T.M., Soltis, S.M., Rees, D.C., Abresch, E., Feher, G.

(1997) Science 276: 812-816

Released	1997-10-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) (protein) PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) (protein) PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) (protein)
Unique Ligands	BCL, BPH, FE2, U10

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1AIJ \| pdb_00001aij	Download File View File

PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE

Stowell, M.H.B., Mcphillips, T.M., Soltis, S.M., Rees, D.C., Abresch, E., Feher, G.

(1997) Science 276: 812-816

Released	1997-10-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) (protein) PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) (protein) PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) (protein)
Unique Ligands	BCL, BPH, FE2, LDA, U10

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1CXA \| pdb_00001cxa	Download File View File

CRYSTALLIZATION AND X-RAY STRUCTURE DETERMINATION OF CYTOCHROME C2 FROM RHODOBACTER SPHAEROIDES IN THREE CRYSTAL FORMS

Axelrod, H.L., Feher, G., Allen, J.P., Chirino, A.J., Day, M.W., Hsu, B.T., Rees, D.C.

(1994) Acta Crystallogr D Biol Crystallogr 50: 596-602

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C2 (protein)
Unique Ligands	HEC, IMD

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1CXC \| pdb_00001cxc	Download File View File

CRYSTALLIZATION AND X-RAY STRUCTURE DETERMINATION OF CYTOCHROME C2 FROM RHODOBACTER SPHAEROIDES IN THREE CRYSTAL FORMS

Axelrod, H.L., Feher, G., Allen, J.P., Chirino, A.J., Day, M.W., Hsu, B.T., Rees, D.C.

(1994) Acta Crystallogr D Biol Crystallogr 50: 596-602

Released	1995-09-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C2 (protein)
Unique Ligands	HEC

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1DS8 \| pdb_00001ds8	Download File View File

PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE WITH THE PROTON TRANSFER INHIBITOR CD2+

Axelrod, H.L., Abresch, E.C., Paddock, M.L., Okamura, M.Y., Feher, G.

(2000) Proc Natl Acad Sci U S A 97: 1542-1547

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cereibacter sphaeroides
Macromolecule	REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCL, BPH, CD, CL, FE2, LDA, U10

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1DV3 \| pdb_00001dv3	Download File View File

PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-SEPARATED D+QAQB-STATE WITH THE PROTON TRANSFER INHIBITOR CD2+

Axelrod, H.L., Abresch, E.C., Paddock, M.L., Okamura, M.Y., Feher, G.

(2000) Proc Natl Acad Sci U S A 97: 1542-1547

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOTOSYNTHETIC REACTION CENTER REACTION CENTER (protein)
Unique Ligands	BCL, BPH, CD, CL, FE2, LDA, U10

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1DV6 \| pdb_00001dv6	Download File View File

PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE WITH THE PROTON TRANSFER INHIBITOR ZN2+

Axelrod, H.L., Abresch, E.C., Paddock, M.L., Okamura, M.Y., Feher, G.

(2000) Proc Natl Acad Sci U S A 97: 1542-1547

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOTOSYNTHETIC REACTION CENTER (protein)
Unique Ligands	BCL, BPH, CL, FE2, LDA, U10, ZN

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1DW0 \| pdb_00001dw0	Download File View File

STRUCTURE OF OXIDIZED SHP, AN OXYGEN BINDING CYTOCHROME C

Leys, D., Backers, K., Meyer, T.E., Hagen, W.R., Cusanovich, M.A., Van Beeumen, J.J.

(2000) J Biological Chem 275: 16050-16056

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1DW1 \| pdb_00001dw1	Download File View File

STRUCTURE OF THE CYANIDE COMPLEX OF SHP, AN OXYGEN BINDING CYTOCHROME C

Leys, D., Backers, K., Meyer, T.E., Hagen, W.R., Cusanovich, M.A., Van Beeumen, J.J.

(2000) J Biological Chem 275: 16050-16056

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	CYN, HEC

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1DW2 \| pdb_00001dw2	Download File View File

STRUCTURE OF THE NITRIC OXIDE COMPLEX OF REDUCED SHP, AN OXYGEN BINDING CYTOCHROME C

Leys, D., Backers, K., Meyer, T.E., Hagen, W.R., Cusanovich, M.A., Van Beeumen, J.J.

(2000) J Biological Chem 275: 16050-16056

Released	2000-06-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEM, NO

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1DW3 \| pdb_00001dw3	Download File View File

STRUCTURE OF A REDUCED OXYGEN BINDING CYTOCHROME C

Leys, D., Backers, K., Meyer, T.E., Hagen, W.R., Cusanovich, M.A., Van Beeumen, J.J.

(2000) J Biological Chem 275: 16050-16056

Released	2000-06-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC

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1DX7 \| pdb_00001dx7	Download File View File

Light-harvesting complex 1 beta subunit from Rhodobacter sphaeroides

Conroy, M.J., Westerhuis, W., Parkes-Loach, P.S., Loach, P.A., Hunter, C.N., Williamson, M.P.

(2000) J Mol Biology 298: 83

Released	2000-04-18
Method	SOLUTION NMR
Organisms	Cereibacter sphaeroides
Macromolecule	Light harvesting 1 b(B850b) polypeptide (protein)

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1E14 \| pdb_00001e14	Download File View File

PHOTOSYNTHETIC REACTION CENTER MUTANT WITH PHE M197 REPLACED WITH ARG (CHAIN M, FM197R) AND GLY M203 REPLACED WITH ASP (CHAIN M, GM203D)

Fyfe, P.K., Ridge, J.P., McAuley, K.E., Cogdell, R.J., Isaacs, N.W., Jones, M.R.

(2000) Biochemistry 39: 5953

Released	2000-06-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CDL, FE, LDA, SPN, U10

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1E6D \| pdb_00001e6d	Download File View File

PHOTOSYNTHETIC REACTION CENTER MUTANT WITH TRP M115 REPLACED WITH PHE (CHAIN M, WM115F) PHE M197 REPLACED WITH ARG (CHAIN M, FM197R)

Ridge, J.P., Fyfe, P.K., McAuley, K.E., Van Brederode, M.E., Robert, B., Van Grondelle, R., Isaacs, N.W., Cogdell, R.J., Jones, M.R.

(2000) Biochem J 351: 567

Released	2000-10-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOTOSYNTHETIC REACTION CENTER H SUBUNIT (protein) PHOTOSYNTHETIC REACTION CENTER L SUBUNIT (protein) PHOTOSYNTHETIC REACTION CENTER M SUBUNIT (protein)
Unique Ligands	BCL, BPH, FE, LDA, PO4, SPN, U10

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1EG2 \| pdb_00001eg2	Download File View File

CRYSTAL STRUCTURE OF RHODOBACTER SPHEROIDES (N6 ADENOSINE) METHYLTRANSFERASE (M.RSRI)

Scavetta, R.D., Thomas, C.B., Walsh, M.A., Szegedi, S., Joachimiak, A., Gumport, R.I., Churchill, M.E.A., Midwest Center for Structural Genomics (MCSG)

(2000) Nucleic Acids Res 28: 3950-3961

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Cereibacter sphaeroides
Macromolecule	MODIFICATION METHYLASE RSRI (protein)
Unique Ligands	MTA

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1EU1 \| pdb_00001eu1	Download File View File

THE CRYSTAL STRUCTURE OF RHODOBACTER SPHAEROIDES DIMETHYLSULFOXIDE REDUCTASE REVEALS TWO DISTINCT MOLYBDENUM COORDINATION ENVIRONMENTS.

Li, H.K., Temple, K., Rajagopalan, K.V., Schindelin, H.

(2000) J Am Chem Soc 122: 7673-7680

Released	2000-08-02
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Cereibacter sphaeroides
Macromolecule	DIMETHYL SULFOXIDE REDUCTASE (protein)
Unique Ligands	6MO, CD, EPE, GLC, MGD, O, SO4

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1F6N \| pdb_00001f6n	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE MUTANT REACTION CENTER PRO L209-> TYR FROM THE PHOTOSYNTHETIC PURPLE BACTERIUM RHODOBACTER SPHAEROIDES

Kuglstatter, A., Ermler, U., Michel, H., Baciou, L., Fritzsch, G.

(2001) Biochemistry 40: 4253-4260

Released	2001-04-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Cereibacter sphaeroides
Macromolecule	REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCL, BPH, FE, LDA, PO4, SPO, U10

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1FNP \| pdb_00001fnp	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE MUTANT REACTION CENTER PRO L209-> PHE FROM THE PHOTOSYNTHETIC PURPLE BACTERIUM RHODOBACTER SPHAEROIDES

Kuglstatter, A., Ermler, U., Michel, H., Baciou, L., Fritzsch, G.

(2001) Biochemistry 40: 4253-4260

Released	2001-04-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Cereibacter sphaeroides
Macromolecule	REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCL, BPH, FE, LDA, PO4, SPO, U10

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1FNQ \| pdb_00001fnq	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE MUTANT REACTION CENTER PRO L209-> GLU FROM THE PHOTOSYNTHETIC PURPLE BACTERIUM RHODOBACTER SPHAEROIDES

Kuglstatter, A., Ermler, U., Michel, H., Baciou, L., Fritzsch, G.

(2001) Biochemistry 40: 4253-4260

Released	2001-04-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Cereibacter sphaeroides
Macromolecule	REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCL, BPH, FE, LDA, PO4, SPO, U10

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1GQA \| pdb_00001gqa	Download File View File

Cytochrome c' from Rhodobacter Spheriodes

Kantardjieff, K.A., Rupp, B.

(2003) J Chem Crystallogr 33: 413

Released	2002-12-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC

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1JGW \| pdb_00001jgw	Download File View File

Photosynthetic Reaction Center Mutant With Thr M 21 Replaced With Leu

Camara-Artigas, A., Magee, C.L., Williams, J.C., Allen, J.P.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1281-1286

Released	2001-09-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Photosynthetic Reaction Center H subunit (protein) Photosynthetic Reaction Center L subunit (protein) Photosynthetic Reaction Center M subunit (protein)
Unique Ligands	BCL, BPH, CDL, FE, SPO, U10

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1JGX \| pdb_00001jgx	Download File View File

Photosynthetic Reaction Center Mutant With Thr M 21 Replaced With Asp

Camara-Artigas, A., Magee, C.L., Williams, J.C., Allen, J.P.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1281-1286

Released	2001-09-05
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Photosynthetic Reaction Center H subunit (protein) Photosynthetic Reaction Center L subunit (protein) Photosynthetic Reaction Center M subunit (protein)
Unique Ligands	BCL, BPH, FE, SPO, U10

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1JGY \| pdb_00001jgy	Download File View File

Photosynthetic Reaction Center Mutant With Tyr M 76 Replaced With Phe

Camara-Artigas, A., Magee, C.L., Williams, J.C., Allen, J.P.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1281-1286

Released	2001-09-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Photosynthetic Reaction Center H Subunit (protein) Photosynthetic Reaction Center L Subunit (protein) Photosynthetic Reaction Center M Subunit (protein)
Unique Ligands	BCL, BPH, CDL, FE, SPO, U10

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1JGZ \| pdb_00001jgz	Download File View File

Photosynthetic Reaction Center Mutant With Tyr M 76 Replaced With Lys

Camara-Artigas, A., Magee, C.L., Williams, J.C., Allen, J.P.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1281-1286

Released	2001-09-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Photosynthetic Reaction Center H subunit (protein) Photosynthetic Reaction Center L subunit (protein) Photosynthetic Reaction Center M subunit (protein)
Unique Ligands	BCL, BPH, CDL, FE, SPO, U10

1 to 25 of 320 Structures

Page 1 of 13

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A7J | pdb_00001a7j

1AIG | pdb_00001aig

1AIJ | pdb_00001aij

1CXA | pdb_00001cxa

1CXC | pdb_00001cxc

1DS8 | pdb_00001ds8

1DV3 | pdb_00001dv3

1DV6 | pdb_00001dv6

1DW0 | pdb_00001dw0

1DW1 | pdb_00001dw1

1DW2 | pdb_00001dw2

1DW3 | pdb_00001dw3

1DX7 | pdb_00001dx7

1E14 | pdb_00001e14

1E6D | pdb_00001e6d

1EG2 | pdb_00001eg2

1EU1 | pdb_00001eu1

1F6N | pdb_00001f6n

1FNP | pdb_00001fnp

1FNQ | pdb_00001fnq

1GQA | pdb_00001gqa

1JGW | pdb_00001jgw

1JGX | pdb_00001jgx

1JGY | pdb_00001jgy

1JGZ | pdb_00001jgz