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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "COX4I1"

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Search Summary

This query matches 47 Structures.

Refinements

Structure Determination Methodology

experimental (47)

Scientific Name of Source Organism

	Escherichia coli (9)
	Staphylococcus aureus (9)
	Mus musculus (7)
	Saccharomyces cerevisiae (4)
	Anabaena sp. (3)
	Escherichia coli K-12 (3)
	Muvirus mu (3)
	Staphylococcus aureus subsp. aureus str. Newman (3)
	Neurospora (2)
	synthetic construct (2)

More...

Taxonomy

	Bacteria (29)
	Eukaryota (14)
	Duplodnaviria (3)
	Riboviria (2)
	other sequences (2)
	unclassified bacterial viruses (1)

Experimental Method

X-RAY DIFFRACTION (47)

Polymer Entity Type

	Protein (45)
	DNA (20)
	RNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (13)
	2.5 - 3.0 (13)
	3.0 - 3.5 (11)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (3)
	2000 - 2004 (10)
	2005 - 2009 (8)
	2010 - 2014 (10)
	2015 - 2019 (10)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (8)
	Ligases (3)
	Transferases (2)

Symmetry Type

	Asymmetric (18)
	Cyclic (21)
	Dihedral (6)
	Helical (1)

SCOP Classification

	All alpha proteins (21)
	Alpha and beta proteins (a/b) (12)
	All beta proteins (7)
	Alpha and beta proteins (a+b) (3)
	Artifacts (5)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 47 Structures

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1BCM \| pdb_00001bcm	Download File View File

BACTERIOPHAGE MU TRANSPOSASE CORE DOMAIN WITH 2 MONOMERS PER ASYMMETRIC UNIT

Rice, P.A., Mizuuchi, K.

(1995) Cell 82: 209-220

Released	1995-10-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Muvirus mu
Macromolecule	BACTERIOPHAGE MU TRANSPOSASE (protein)

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1BCO \| pdb_00001bco	Download File View File

BACTERIOPHAGE MU TRANSPOSASE CORE DOMAIN

Rice, P.A., Mizuuchi, K.

(1995) Cell 82: 209-220

Released	1995-10-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Muvirus mu
Macromolecule	BACTERIOPHAGE MU TRANSPOSASE (protein)

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1FLO \| pdb_00001flo	Download File View File

FLP Recombinase-Holliday Junction Complex I

Chen, Y., Narendra, U., Iype, L.E., Cox, M.M., Rice, P.A.

(2000) Mol Cell 6: 885-897

Released	2000-09-04
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	FLP RECOMBINASE (protein) SYMMETRIZED FRT DNA SITES (nucleic acid)
Unique Ligands	PHS

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1GDR \| pdb_00001gdr	Download File View File

MODEL FOR A DNA MEDIATED SYNAPTIC COMPLEX SUGGESTED BY CRYSTAL PACKING OF GAMMA DELTA RESOLVASE SUBUNITS

Rice, P.A., Steitz, T.A.

(1994) EMBO J 13: 1514-1524

Released	1994-04-30
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli
Macromolecule	GAMMA DELTA-RESOLVASE (protein)

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1IHF \| pdb_00001ihf	Download File View File

INTEGRATION HOST FACTOR/DNA COMPLEX

Rice, P.A., Yang, S.-W., Mizuuchi, K., Nash, H.A.

(1996) Cell 87: 1295-1306

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (INTEGRATION HOST FACTOR (ALPHA) (IHF)) (protein) PROTEIN (INTEGRATION HOST FACTOR (BETA) (IHF)) (protein) DNA (35-MER) (nucleic acid) DNA (5'-D(GPCPTPTPAPTPCPAPAPTPTPTPGPTPTPGPC PAPCPC)-3') (nucleic acid) DNA (5'-D(GPGPCPCPAPAPAPAPAPAPGPCPAPTP*T)-3') (nucleic acid)
Unique Ligands	CD

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1M6X \| pdb_00001m6x	Download File View File

Flpe-Holliday Junction Complex

Conway, A.B., Chen, Y., Rice, P.A.

(2003) J Mol Biology 326: 425-434

Released	2003-02-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Flp recombinase (protein) Symmetrized FRT site (nucleic acid)

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1OUZ \| pdb_00001ouz	Download File View File

Crystal structure of a mutant IHF (BetaE44A) complexed with a variant H' Site (T44A)

Lynch, T.W., Read, E.K., Mattis, A.N., Gardner, J.F., Rice, P.A.

(2003) J Mol Biology 330: 493-502

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Escherichia coli
Macromolecule	Integration Host Factor Alpha-subunit (protein) Integration Host Factor Beta-subunit (protein) 5'-D(GPCPTPTPAPTPCPAPAPTPTPTPGPTPAPGPCPAPCPC)-3' (nucleic acid) 5'-D(GPGPCPCPAPAPAPAPAPAPGPCPAPTP*T)-3' (nucleic acid) Phage lambda H' site (nucleic acid)

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1OWF \| pdb_00001owf	Download File View File

Crystal structure of a mutant IHF (BetaE44A) complexed with the native H' Site

Lynch, T.W., Read, E.K., Mattis, A.N., Gardner, J.F., Rice, P.A.

(2003) J Mol Biology 330: 493-502

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Integration Host Factor Alpha-subunit (protein) Integration Host Factor beta-subunit (protein) 5'-D(GPCPTPTPAPTPCPAPAPTPTPTPGPTPTPGPCPAPCPC)-3' (nucleic acid) 5'-D(GPGPCPCPAPAPAPAPAPAPGPCPAPTP*T)-3' (nucleic acid) Phage lambda H' site (nucleic acid)

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1OWG \| pdb_00001owg	Download File View File

Crystal structure of WT IHF complexed with an altered H' site (T44A)

Lynch, T.W., Read, E.K., Mattis, A.N., Gardner, J.F., Rice, P.A.

(2003) J Mol Biology 330: 493-502

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Integration Host Factor Alpha-subunit (protein) Integration Host Factor beta-subunit (protein) 5'-D(GPCPTPTPAPTPCPAPAPTPTPTPGPTPAPGPCPAPCPC)-3' (nucleic acid) 5'-D(GPGPCPCPAPAPAPAPAPAPGPCPAPTP*T)-3' (nucleic acid) Phage lambda H' site (nucleic acid)

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1P4E \| pdb_00001p4e	Download File View File

Flpe W330F mutant-DNA Holliday Junction Complex

Rice, P.A., Chen, Y.

(2003) J Biological Chem 278: 24800-24807

Released	2003-05-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Recombinase FLP protein (protein) 33-MER (nucleic acid) 5'-D(TPAPAPGPTPTPCPCPTPAPTPTPC)-3' (nucleic acid) 5'-D(TPTPTPAPAPAPAPGPAPAPTPAPGPGPAPAPCPTPTP*C)-3' (nucleic acid)
Unique Ligands	2PO

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1P51 \| pdb_00001p51	Download File View File

Anabaena HU-DNA cocrystal structure (AHU6)

Swinger, K.K., Lemberg, K.M., Zhang, Y., Rice, P.A.

(2003) EMBO J 22: 3749-3760

Released	2003-05-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Anabaena sp.
Macromolecule	DNA-binding protein HU (protein) 5'-D(GPCPAPTPAPTPCPAPAPTPTPTPGPTPTPGPCPAP*T)-3' (nucleic acid)

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1P71 \| pdb_00001p71	Download File View File

Anabaena HU-DNA corcrystal structure (TR3)

Swinger, K.S., Lemberg, K.M., Zhang, Y., Rice, P.A.

(2003) EMBO J 22: 3749-3760

Released	2003-05-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Anabaena sp.
Macromolecule	DNA-binding protein HU (protein) 5'-D(TPGPCPTPTPAPTPCPAPAPTPTPTPGPTPTPGPCPAPCP*C)-3' (nucleic acid)

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1P78 \| pdb_00001p78	Download File View File

Anabaena HU-DNA cocrystal structure (AHU2)

Swinger, K.S., Lemberg, K.M., Zhang, Y., Rice, P.A.

(2003) EMBO J 22: 3749-3760

Released	2003-05-13
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Anabaena sp.
Macromolecule	DNA-binding protein HU (protein) 5'-D(TPGPCPAPTPAPTPCPAPAPTPTPTPGPTPTPGPCPAPCP*C)-3' (nucleic acid)

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1SZP \| pdb_00001szp	Download File View File

A Crystal Structure of the Rad51 Filament

Conway, A.B., Lynch, T.W., Zhang, Y., Fortin, G.S., Symington, L.S., Rice, P.A.

(2004) Nat Struct Mol Biol 11: 791-796

Released	2004-07-13
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA repair protein RAD51 (protein)
Unique Ligands	SO4

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1YFH \| pdb_00001yfh	Download File View File

wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine

Duguid, E.M., Rice, P.A., He, C.

(2005) J Mol Biology 350: 657-666

Released	2005-12-13
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Homo sapiens
Macromolecule	Methylated-DNA--protein-cysteine methyltransferase (protein) 5'-D(CPCPTPAPCPAPCPAPCPAPTPCPCPAPCPA)-3' (nucleic acid) 5'-D(GPTPGPGPAPTPGP(XCY)PGPTPGPTPAPGPGPT)-3' (nucleic acid)
Unique Ligands	ZN

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2BV6 \| pdb_00002bv6	Download File View File

Crystal structure of MgrA, a global regulator and major virulence determinant in Staphylococcus aureus

Chen, P.R., Bae, T., Williams, W.A., Duguid, E.M., Rice, P.A., Schneewind, O., He, C.

(2006) Nat Chem Biol 2: 591

Released	2006-09-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Staphylococcus aureus
Macromolecule	HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA (protein)
Unique Ligands	SO4

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2HT0 \| pdb_00002ht0	Download File View File

IHF bound to doubly nicked DNA

Swinger, K.K., Rice, P.A.

(2007) J Mol Biology 365: 1005-1016

Released	2006-11-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 2 Unique nucleic acid chains: 4
Unique Ligands	CD

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2NP2 \| pdb_00002np2	Download File View File

Hbb-DNA complex

Rice, P.A., Mouw, K.W.

(2007) Mol Microbiol 63: 1319-1330

Released	2007-02-27
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Borreliella burgdorferi
Macromolecule	Hbb (protein) 36-MER (nucleic acid)

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2R0Q \| pdb_00002r0q	Download File View File

Crystal structure of a serine recombinase- DNA regulatory complex

Rice, P.A., Mouw, K.W.

(2008) Mol Cell 30: 145-155

Released	2008-04-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Staphylococcus aureus
Macromolecule	Putative transposon Tn552 DNA-invertase bin3 (protein) 31-MER (nucleic acid)
Unique Ligands	SO4

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2RSL \| pdb_00002rsl	Download File View File

REFINEMENT OF GAMMA DELTA RESOLVASE REVEALS A STRIKINGLY FLEXIBLE MOLECULE

Rice, P.A., Steitz, T.A.

(1994) Structure 2: 371-384

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	GAMMA DELTA-RESOLVASE (protein)
Unique Ligands	SO4

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3HRM \| pdb_00003hrm	Download File View File

Crystal structure of Staphylococcus aureus protein SarZ in sulfenic acid form

Poor, C.B., Duguid, E., Rice, P.A., He, C.

(2009) J Biological Chem 284: 23517-23524

Released	2009-07-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	HTH-type transcriptional regulator sarZ (protein)

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3HSE \| pdb_00003hse	Download File View File

Crystal structure of Staphylococcus aureus protein SarZ in reduced form

Poor, C.B., Duguid, E., Rice, P.A., He, C.

(2009) J Biological Chem 284: 23517-23524

Released	2009-07-07
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	HTH-type transcriptional regulator sarZ (protein)

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3HSR \| pdb_00003hsr	Download File View File

Crystal structure of Staphylococcus aureus protein SarZ in mixed disulfide form

Poor, C.B., Duguid, E., Rice, P.A., He, C.

(2009) J Biological Chem 284: 23517-23524

Released	2009-07-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	HTH-type transcriptional regulator sarZ (protein)
Unique Ligands	ACT, BT6, GOL

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3HVT \| pdb_00003hvt	Download File View File

STRUCTURAL BASIS OF ASYMMETRY IN THE HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE HETERODIMER

Steitz, T.A., Smerdon, S.J., Jaeger, J., Wang, J., Kohlstaedt, L.A., Chirino, A.J., Friedman, J.M., Rice, P.A.

(1994) Proc Natl Acad Sci U S A 91: 3911-3915

Released	1994-10-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) (protein) HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) (protein)
Unique Ligands	NVP

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3JSO \| pdb_00003jso	Download File View File

Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex

Zhang, A.P.P., Pigli, Y.Z., Rice, P.A.

(2010) Nature 466: 883-886

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Escherichia coli K-12
Macromolecule	LexA repressor (protein) DNA (5'-D(TPAPTPAPCPTPGPTPAPTPAPTPAPTPAPTPAPCPAPGPTPA)-3') (nucleic acid)

1 to 25 of 47 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BCM | pdb_00001bcm

1BCO | pdb_00001bco

1FLO | pdb_00001flo

1GDR | pdb_00001gdr

1IHF | pdb_00001ihf

1M6X | pdb_00001m6x

1OUZ | pdb_00001ouz

1OWF | pdb_00001owf

1OWG | pdb_00001owg

1P4E | pdb_00001p4e

1P51 | pdb_00001p51

1P71 | pdb_00001p71

1P78 | pdb_00001p78

1SZP | pdb_00001szp

1YFH | pdb_00001yfh

2BV6 | pdb_00002bv6

2HT0 | pdb_00002ht0

2NP2 | pdb_00002np2

2R0Q | pdb_00002r0q

2RSL | pdb_00002rsl

3HRM | pdb_00003hrm

3HSE | pdb_00003hse

3HSR | pdb_00003hsr

3HVT | pdb_00003hvt

3JSO | pdb_00003jso