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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = GST

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Aspergillus terreus (3)
	Fischerella ambigua UTEX 1903 (3)
	Halobacillus halophilus (2)
	Limnothrix sp. CACIAM 69d (2)
	Pseudo-nitzschia multiseries (2)
	Streptomyces coelicolor A3(2) (2)
	Abies grandis (1)
	Aeropyrum pernix K1 (1)
	Arabidopsis thaliana (1)
	Fusarium fujikuroi (1)

More...

Taxonomy

	Bacteria (14)
	Eukaryota (8)
	Archaea (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (10)
	2.5 - 3.0 (2)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (5)
	2015 - 2019 (8)
	2020 - 2024 (8)

Enzyme Classification Name

	Transferases (8)
	Lyases (2)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (7)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (1)
	Artifacts (2)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 23 of 23 Structures

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1ZB6 \| pdb_00001zb6	Download File View File

Co-Crystal Structure of ORF2 an Aromatic Prenyl Transferase from Streptomyces sp. strain cl190 complexed with GSPP and 1,6-dihydroxynaphtalene

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces sp.
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	DIN, GST, MG, NO3

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1ZDW \| pdb_00001zdw	Download File View File

Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GSPP and Flaviolin

Kuzuyama, T., Noel, J.P., Richard, S.B.

(2005) Nature 435: 983-987

Released	2005-06-21
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Streptomyces sp. CL190
Macromolecule	Aromatic prenyltransferase (protein)
Unique Ligands	FLV, GST, MG, NO3

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3SDU \| pdb_00003sdu	Download File View File

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

McAndrew, R.P., Peralta-Yahya, P.P., DeGiovanni, A., Pereira, J.H., Hadi, M.Z., Keasling, J.D., Adams, P.D.

(2011) Structure 19: 1876-1884

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Abies grandis
Macromolecule	Alpha-bisabolene synthase (protein)
Unique Ligands	CL, GST, MG

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3V1V \| pdb_00003v1v	Download File View File

Crystal structure of 2-methylisoborneol synthase from Streptomyces coelicolor A3(2) in complex with Mg2+ and geranyl-S-thiolodiphosphate

Koksal, M., Christianson, D.W.

(2012) Biochemistry 51: 3011-3020

Released	2012-04-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	2-methylisoborneol synthase (protein)
Unique Ligands	GOL, GST, MG

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3VC1 \| pdb_00003vc1	Download File View File

Crystal structure of geranyl diphosphate C-methyltransferase from Streptomyces coelicolor A3(2) in complex with Mg2+, geranyl-S-thiolodiphosphate, and S-adenosyl-L-homocysteine

Koksal, M., Christianson, D.W.

(2012) Biochemistry 51: 3003-3010

Released	2012-04-11
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Geranyl diphosphate 2-C-methyltransferase (protein)
Unique Ligands	GOL, GST, MG, SAH, SO4

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4LLS \| pdb_00004lls	Download File View File

Crystal structure of a farnesyl diphosphate synthase from Roseobacter denitrificans OCh 114, target EFI-509393, with IPP, GSPP, and calcium bound in active site

Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2013-07-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	Geranyltranstransferase (protein)
Unique Ligands	CA, GST, IPE

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4OD5 \| pdb_00004od5	Download File View File

Substrate-bound structure of a UbiA homolog from Aeropyrum pernix K1

Li, W., Cheng, W.

(2014) Science 343: 878-881

Released	2014-03-19
Method	X-RAY DIFFRACTION 3.557 Å
Organisms	Aeropyrum pernix K1
Macromolecule	4-hydroxybenzoate octaprenyltransferase (protein)
Unique Ligands	GST, MG, PHB

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5KCQ \| pdb_00005kcq	Download File View File

Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate

Sun, F., Gao, B.

(2017) Nat Chem Biol 13: 226-234

Released	2016-12-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aspergillus terreus
Macromolecule	aromatic prenyltransferase (protein)
Unique Ligands	GST

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5KCY \| pdb_00005kcy	Download File View File

Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate and (+)-butyrolactone II

Sun, F., Gao, B.

(2017) Nat Chem Biol 13: 226-234

Released	2016-12-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aspergillus terreus
Macromolecule	aromatic prenyltransferase (protein)
Unique Ligands	GST, XBU

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5KD0 \| pdb_00005kd0	Download File View File

Crystal structure of the aromatic prenyltransferase AtaPT(E91A) mutant from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate and (+)-butyrolactone II

Sun, F., Gao, B.

(2017) Nat Chem Biol 13: 226-234

Released	2016-12-21
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Aspergillus terreus
Macromolecule	aromatic prenyltransferase (protein)
Unique Ligands	GST, XBU

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5XK9 \| pdb_00005xk9	Download File View File

Crystal structure of Isosesquilavandulyl Diphosphate Synthase from Streptomyces sp. strain CNH-189 in complex with GSPP and DMAPP

Ko, T.P., Guo, R.T., Liu, W., Chen, C.C., Gao, J.

(2018) Angew Chem Int Ed Engl 57: 683-687

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.137 Å
Organisms	Streptomyces sp. CNH189
Macromolecule	Undecaprenyl diphosphate synthase (protein)
Unique Ligands	DMA, GST, MG

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5Z44 \| pdb_00005z44	Download File View File

Crystal structure of prenyltransferase AmbP1 complexed with GSPP

Awakawa, T., Nakashima, Y., Mori, T., Abe, I.

(2018) Angew Chem Int Ed Engl 57: 6810-6813

Released	2018-06-06
Method	X-RAY DIFFRACTION 2.458 Å
Organisms	Fischerella ambigua UTEX 1903
Macromolecule	AmbP1 (protein)
Unique Ligands	GST, MG

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5Z45 \| pdb_00005z45	Download File View File

Crystal structure of prenyltransferase AmbP1 pH6.5 complexed with GSPP and cis-indolyl vinyl isonitrile

Awakawa, T., Nakashima, Y., Mori, T., Abe, I.

(2018) Angew Chem Int Ed Engl 57: 6810-6813

Released	2018-06-06
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Fischerella ambigua UTEX 1903
Macromolecule	AmbP1 (protein)
Unique Ligands	8XL, GST, MG

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5Z46 \| pdb_00005z46	Download File View File

Crystal structure of prenyltransferase AmbP1 pH8 complexed with GSPP and cis-indolyl vinyl isonitrile

Awakawa, T., Nakashima, Y., Mori, T., Abe, I.

(2018) Angew Chem Int Ed Engl 57: 6810-6813

Released	2018-06-06
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Fischerella ambigua UTEX 1903
Macromolecule	AmbP1 (protein)
Unique Ligands	8XL, GST, MG

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6IME \| pdb_00006ime	Download File View File

Rv2361c complex with substrate analogues

Ko, T.-P., Guo, R.-T., Chen, C.-C., Liu, W.

(2019) Acta Crystallogr F Struct Biol Commun 75: 212-216

Released	2019-09-04
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Decaprenyl diphosphate synthase (protein)
Unique Ligands	CL, CO3, DTT, GOL, GST, ISY, MG

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6VKZ \| pdb_00006vkz	Download File View File

Crystal Structure of the N-prenyltransferase DabA in Complex with GSPP and Mg2+

Chekan, J.R., Noel, J.P., Moore, B.S.

(2020) Proc Natl Acad Sci U S A 117: 12799-12805

Released	2020-04-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudo-nitzschia multiseries
Macromolecule	DabA (protein)
Unique Ligands	GST, MG

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6VL0 \| pdb_00006vl0	Download File View File

Crystal Structure of the N-prenyltransferase DabA in Complex with GSPP and Mn2+

Chekan, J.R., Noel, J.P., Moore, B.S.

(2020) Proc Natl Acad Sci U S A 117: 12799-12805

Released	2020-04-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudo-nitzschia multiseries
Macromolecule	DabA (protein)
Unique Ligands	GST, MG, MN

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7VMW \| pdb_00007vmw	Download File View File

Crystal structure of LimF prenyltransferase bound with a peptide substrate and GSPP

Hamada, K., Kobayashi, S., Okada, C., Zhang, Y., Inoue, S., Goto, Y., Suga, H., Ogata, K., Sengoku, T.

(2022) Nat Catal

Released	2022-08-03
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Limnothrix sp. CACIAM 69d synthetic construct
Macromolecule	LynF/TruF/PatF family peptide O-prenyltransferase (protein) substrate peptide (protein)
Unique Ligands	GST, MG, PPV

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7VMY \| pdb_00007vmy	Download File View File

Crystal structure of LimF prenyltransferase bound with GSPP

Hamada, K., Kobayashi, S., Okada, C., Zhang, Y., Inoue, S., Goto, Y., Suga, H., Ogata, K., Sengoku, T.

(2022) Nat Catal

Released	2022-08-03
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Limnothrix sp. CACIAM 69d
Macromolecule	LynF/TruF/PatF family peptide O-prenyltransferase (protein)
Unique Ligands	BTB, GST, MG

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8DAZ \| pdb_00008daz	Download File View File

Crystal structure of DMATS1 prenyltransferase in complex with L-Trp and GSPP

Eaton, S.A., Ronnebaum, T.A., Roose, B.W., Christianson, D.W.

(2022) Biochemistry 61: 2025-2035

Released	2022-09-28
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Fusarium fujikuroi
Macromolecule	Dimethylallyltryptophan synthase 1 (protein)
Unique Ligands	GST, TRP

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8IS8 \| pdb_00008is8	Download File View File

CrtMLIKE with two GsPP molecules

Park, J.y.

To be published

Released	2024-06-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Halobacillus halophilus
Macromolecule	CrtM (protein)
Unique Ligands	GST, MG

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8ISA \| pdb_00008isa	Download File View File

CrtMLIKE with one GsPP molecule

Park, J.Y.

To be published

Released	2024-06-26
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Halobacillus halophilus
Macromolecule	CrtM (protein)
Unique Ligands	GST

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8KGB \| pdb_00008kgb	Download File View File

SlNDPS1-AtcPT4 Chimera complexed with GSPP, Mg2+, and IPP

Suenaga-Hiromori, M., Ishii, T., Imaizumi, R., Takeshita, K., Yanai, T., Matsuura, H., Sakai, N., Yamaguchi, H., Yanbe, F., Waki, T., Tozawa, Y., Miyagi-Inoue, Y., Yamamoto, M., Kataoka, K., Nakayama, T., Yamashita, S., Takahashi, S.

To be published

Released	2024-08-21
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Arabidopsis thaliana Solanum lycopersicum
Macromolecule	Dimethylallylcistransferase CPT1, chloroplastic,Dehydrodolichyl diphosphate synthase 2 (protein)
Unique Ligands	GST, IPE, MG

1 to 23 of 23 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZB6 | pdb_00001zb6

1ZDW | pdb_00001zdw

3SDU | pdb_00003sdu

3V1V | pdb_00003v1v

3VC1 | pdb_00003vc1

4LLS | pdb_00004lls

4OD5 | pdb_00004od5

5KCQ | pdb_00005kcq

5KCY | pdb_00005kcy

5KD0 | pdb_00005kd0

5XK9 | pdb_00005xk9

5Z44 | pdb_00005z44

5Z45 | pdb_00005z45

5Z46 | pdb_00005z46

6IME | pdb_00006ime

6VKZ | pdb_00006vkz

6VL0 | pdb_00006vl0

7VMW | pdb_00007vmw

7VMY | pdb_00007vmy

8DAZ | pdb_00008daz

8IS8 | pdb_00008is8

8ISA | pdb_00008isa

8KGB | pdb_00008kgb