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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: BIRD ID(s) = PRD_000422

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Search Summary

This query matches 74 Structures.

Refinements

Structure Determination Methodology

experimental (74)

Scientific Name of Source Organism

	unidentified influenza virus (74)
	Homo sapiens (16)
	Anas platyrhynchos (8)
	Sus scrofa (6)
	Mus musculus (2)
	Gallus gallus (1)
	Influenza A virus (A/Chicken/Hong Kong/786/97 (H5N1)) (1)
	Influenza A virus (A/Hong Kong/483/1997(H5N1)) (1)
	Influenza A virus (A/X-31(H3N2)) (1)
	Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) (1)

Taxonomy

	Riboviria (74)
	Eukaryota (31)

Experimental Method

	X-RAY DIFFRACTION (67)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

	Protein (74)
	DNA (2)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (18)
	2.0 - 2.5 (20)
	2.5 - 3.0 (18)
	3.0 - 3.5 (7)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (2)
	2000 - 2004 (1)
	2005 - 2009 (13)
	2010 - 2014 (4)
	2015 - 2019 (33)
	2020 - 2024 (20)

Enzyme Classification Name

	Hydrolases (17)
	Transferases (2)

Membrane Protein Annotation

	mpstruc (6)
	OPM (1)

Symmetry Type

	Asymmetric (35)
	Cyclic (40)

SCOP Classification

	All beta proteins (25)
	Coiled coil proteins (11)
	Artifacts (9)
	Alpha and beta proteins (a+b) (6)
	Multi-domain proteins (alpha and beta) (1)
	Peptides (1)
	All alpha proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 74 Structures

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1AA7 \| pdb_00001aa7	Download File View File

INFLUENZA VIRUS MATRIX PROTEIN CRYSTAL STRUCTURE AT PH 4.0

Sha, B., Luo, M.

(1997) Nat Struct Biol 4: 239-244

Released	1998-01-28
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	unidentified influenza virus
Macromolecule	INFLUENZA VIRUS MATRIX PROTEIN (protein)

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1RVT \| pdb_00001rvt	Download File View File

1930 H1 Hemagglutinin in complex with LSTC

Skehel, J.J., Gamblin, S.J., Haire, L.F., Russell, R.J., Stevens, D.J., Xiao, B., Ha, Y., Vasisht, N., Steinhauer, D.A., Daniels, R.S.

(2004) Science 303: 1838-1842

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	unidentified influenza virus
Macromolecule	hemagglutinin (protein)
Unique Ligands	NDG
Unique branched monosaccharides	BGC, GAL, NAG, SIA

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2GX9 \| pdb_00002gx9	Download File View File

X-ray structure of influenza virus NS1 effector domain

Bornholdt, Z.A., Prasad, B.V.

(2006) Nat Struct Mol Biol 13: 559-560

Released	2006-05-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	unidentified influenza virus
Macromolecule	NS1 Effector Domain (protein)
Unique Ligands	SCN

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2VIU \| pdb_00002viu	Download File View File

INFLUENZA VIRUS HEMAGGLUTININ

Bizebard, T., Fleury, D., Gigant, B., Wharton, S.A., Skehel, J.J., Knossow, M.

(1998) Nat Struct Biol 5: 119-123

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Influenza A virus (A/X-31(H3N2)) unidentified influenza virus
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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2VLJ \| pdb_00002vlj	Download File View File

The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain

Ishizuka, J., Stewart-Jones, G., Van Der Merwe, A., Bell, J., Mcmichael, A., Jones, Y.

(2008) Immunity 28: 171

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens unidentified influenza virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) FLU MATRIX PEPTIDE (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) JM22 TCR ALPHA CHAIN (protein) JM22 TCR BETA CHAIN (protein)

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2VLK \| pdb_00002vlk	Download File View File

The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain

Ishizuka, J., Stewart-Jones, G., Van Der Merwe, A., Bell, J., Mcmichael, A., Jones, Y.

(2008) Immunity 28: 171

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens unidentified influenza virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) FLU MATRIX PEPTIDE (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) JM22 TCR ALPHA CHAIN (protein) JM22 TCR BETA CHAIN (protein)

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2VLL \| pdb_00002vll	Download File View File

The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain

Ishizuka, J., Stewart-Jones, G., Van Der Merwe, A., Bell, J., Mcmichael, A., Jones, Y.

(2008) Immunity 28: 171

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens unidentified influenza virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) FLU MATRIX PEPTIDE (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein)

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2VLR \| pdb_00002vlr	Download File View File

The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain

Ishizuka, J., Stewart-Jones, G., van der Merwe, A., Bell, J., McMichael, A., Jones, Y.

(2008) Immunity 28: 171

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens unidentified influenza virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) FLU MATRIX PEPTIDE (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) JM22 TCR ALPHA CHAIN (protein) JM22 TCR BETA CHAIN (protein)

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2WR0 \| pdb_00002wr0	Download File View File

Structures of influenza H2 Hemagglutinins

Liu, J., Stevens, D., Haire, L., Coombs, P., Russell, R., Gamblin, S., Skehel, J.

(2009) Proc Natl Acad Sci U S A 106: 17175

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	unidentified influenza virus
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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2WR1 \| pdb_00002wr1	Download File View File

structure of influenza H2 hemagglutinin with human receptor

Liu, J., Stevens, D.J., Haire, L.F., Walker, P.A., Coombs, P.J., Russell, R.J., Gamblin, S.J., Skehel, J.J.

(2009) Proc Natl Acad Sci U S A 106: 17175

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	unidentified influenza virus
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, MAN, NAG, SIA

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2WR2 \| pdb_00002wr2	Download File View File

structure of influenza H2 avian hemagglutinin with avian receptor

Liu, J., Stevens, D.J., Haire, L.F., Walker, P.A., Coombs, P.J., Russell, R.J., Gamblin, S.J., Skehel, J.J.

(2009) Proc Natl Acad Sci U S A 106: 17175

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	unidentified influenza virus
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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2WR3 \| pdb_00002wr3	Download File View File

structure of influenza H2 duck Ontario hemagglutinin with avian receptor

Liu, J., Stevens, D.J., Haire, L.F., Walker, P.A., Coombs, P.J., Russell, R.J., Gamblin, S.J., Skehel, J.J.

(2009) Proc Natl Acad Sci U S A 106: 17175

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	unidentified influenza virus
Macromolecule	HEMAGGLUTININ (protein)
Unique branched monosaccharides	GAL, NAG, SIA

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2WR4 \| pdb_00002wr4	Download File View File

structure of influenza H2 duck Ontario hemagglutinin with human receptor

Liu, J., Stevens, D.J., Haire, L.F., Walker, P.A., Coombs, P.J., Russell, R.J., Gamblin, S.J., Skehel, J.J.

(2009) Proc Natl Acad Sci U S A 106: 17175

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	unidentified influenza virus
Macromolecule	HEMAGGLUTININ (protein)
Unique branched monosaccharides	GAL, NAG, SIA

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2WR5 \| pdb_00002wr5	Download File View File

structure of influenza H2 duck Ontario hemagglutinin

Liu, J., Stevens, D.J., Haire, L.F., Walker, P.A., Coombs, P.J., Russell, R.J., Gamblin, S.J., Skehel, J.J.

(2009) Proc Natl Acad Sci U S A 106: 17175

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	unidentified influenza virus
Macromolecule	HEMAGGLUTININ (protein)

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2WRC \| pdb_00002wrc	Download File View File

the structure of influenza H2 human singapore hemagglutinin

Liu, J., Stevens, D.J., Haire, L.F., Walker, P.A., Coombs, P.J., Russell, R.J., Gamblin, S.J., Skehel, J.J.

(2009) Proc Natl Acad Sci U S A 106: 17175

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.706 Å
Organisms	unidentified influenza virus
Macromolecule	HEMAGGLUTININ (protein)

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3F5T \| pdb_00003f5t	Download File View File

X-ray Structure of H5N1 NS1

Bornholdt, Z.A., Prasad, B.V.V.

(2008) Nature 456: 985-988

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	unidentified influenza virus
Macromolecule	Nonstructural protein 1 (protein)

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3NN9 \| pdb_00003nn9	Download File View File

REFINED ATOMIC STRUCTURES OF N9 SUBTYPE INFLUENZA VIRUS NEURAMINIDASE AND ESCAPE MUTANTS

Tulip, W.R., Varghese, J.N., Baker, A.T., Vandonkelaar, A., Laver, W.G., Webster, R.G., Colman, P.M.

(1991) J Mol Biology 221: 487-497

Released	1992-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	unidentified influenza virus
Macromolecule	NEURAMINIDASE N9 (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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4D00 \| pdb_00004d00	Download File View File

Haemagglutinin of H10N8 Influenza Virus Isolated from Humans in Complex with Human Receptor Analogue 6'SLN

Xiong, X., Haire, L.F., Vachieri, S.G., Collins, P.J., Walker, P.A., Martin, S.R., Zhang, Y., McCauley, J.W., Gamblin, S.J., Skehel, J.J.

(2014) Nature 511: 475

Released	2014-06-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	unidentified influenza virus
Macromolecule	HAEMAGGLUTININ HA1 (protein)
Unique Ligands	NAG, NI
Unique branched monosaccharides	GAL, NAG, SIA

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4OXM \| pdb_00004oxm	Download File View File

CRYSTAL STRUCTURE OF Central Coiled-Coil from Influenza Hemagglutinin HA2 without Heptad Repeat Stutter

Malashkevich, V.N., Higgins, C.D., Lai, J.R., Almo, S.C.

To be published

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	unidentified influenza virus
Macromolecule	HA2-Del (protein)

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4P67 \| pdb_00004p67	Download File View File

CRYSTAL STRUCTURE OF Central Coiled-Coil from Influenza Hemagglutinin HA2 without Heptad Repeat Stutter, spacegroup P3(1)

Malashkevich, V.N., Higgins, C.D., Lai, J.R., Almo, S.C.

To be published

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	unidentified influenza virus
Macromolecule	Hemagglutinin (protein)

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4S1X \| pdb_00004s1x	Download File View File

Crystal structure of HA2-Del-L2seM, Central Coiled-Coil from Influenza Hemagglutinin HA2 without Heptad Repeat Stutter

Malashkevich, V.N., Higgins, C.D., Lai, J.R., Almo, S.C.

(2015) Biopolymers 104: 178-185

Released	2015-04-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	unidentified influenza virus
Macromolecule	Truncated hemagglutinin (protein)
Unique Ligands	GOL

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4WSB \| pdb_00004wsb	Download File View File

Bat Influenza A polymerase with bound vRNA promoter

Cusack, S., Pflug, A., Guilligay, D., Reich, S.

(2014) Nature 516: 361-366

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) unidentified influenza virus
Macromolecule	Polymerase PA (protein) Polymerase PB2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) Influenza A polymerase vRNA promoter 3' end (nucleic acid) Influenza A polymerase vRNA promoter 5' end (nucleic acid)
Unique Ligands	PO4, ZN

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5GJX \| pdb_00005gjx	Download File View File

Crystal structure of DUCK MHC I for 2.06 angstrom

Wu, Y., Xia, C.

To be published

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Anas platyrhynchos unidentified influenza virus
Macromolecule	ARG-LEU-ILE-GLN-ASN-SER-ILE-THR-ILE (protein) Beta-2-microglobulin (protein) MHC class I antigen (protein)

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5GJY \| pdb_00005gjy	Download File View File

Crystal structure of DUCK MHC CLASS I for 1.71 angstrom

Wu, Y., Xia, C.

To be published

Released	2017-05-10
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Anas platyrhynchos unidentified influenza virus
Macromolecule	Beta-2-microglobulin (protein) MET-VAL-MET-GLU-LEU-ILE-ARG-MET-ILE (protein) MHC class I antigen (protein)

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5HU8 \| pdb_00005hu8	Download File View File

The crystal structure of hemagglutinin from A/Sichuan/26221/2014 (H5N6) influenza virus

Yang, H., Carney, P.J., Guo, Z., Chang, J.C., Stevens, J.

(2016) J Virol 90: 5770-5784

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	unidentified influenza virus
Macromolecule	hemagglutinin HA1 (protein) hemagglutinin HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

1 to 25 of 74 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AA7 | pdb_00001aa7

1RVT | pdb_00001rvt

2GX9 | pdb_00002gx9

2VIU | pdb_00002viu

2VLJ | pdb_00002vlj

2VLK | pdb_00002vlk

2VLL | pdb_00002vll

2VLR | pdb_00002vlr

2WR0 | pdb_00002wr0

2WR1 | pdb_00002wr1

2WR2 | pdb_00002wr2

2WR3 | pdb_00002wr3

2WR4 | pdb_00002wr4

2WR5 | pdb_00002wr5

2WRC | pdb_00002wrc

3F5T | pdb_00003f5t

3NN9 | pdb_00003nn9

4D00 | pdb_00004d00

4OXM | pdb_00004oxm

4P67 | pdb_00004p67

4S1X | pdb_00004s1x

4WSB | pdb_00004wsb

5GJX | pdb_00005gjx

5GJY | pdb_00005gjy

5HU8 | pdb_00005hu8