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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "van den Berg, B."

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Search Summary

This query matches 173 Structures.

Refinements

Structure Determination Methodology

experimental (173)

Scientific Name of Source Organism

	Bacteroides thetaiotaomicron VPI-5482 (24)
	Pseudomonas aeruginosa PAO1 (23)
	Escherichia coli K-12 (15)
	Escherichia coli (14)
	Pseudomonas aeruginosa (14)
	Bacteroides thetaiotaomicron (8)
	Porphyromonas gingivalis W83 (6)
	Vibrio harveyi (6)
	Candida albicans (5)
	Homo sapiens (5)

More...

Taxonomy

	Bacteria (154)
	Eukaryota (18)
	Archaea (2)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (148)
	ELECTRON MICROSCOPY (20)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (173)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (32)
	2.0 - 2.5 (32)
	2.5 - 3.0 (51)
	3.0 - 3.5 (41)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (7)
	2005 - 2009 (17)
	2010 - 2014 (31)
	2015 - 2019 (54)
	2020 - 2024 (60)

Enzyme Classification Name

	Hydrolases (19)
	Isomerases (4)

Membrane Protein Annotation

	PDBTM (139)
	MemProtMD (120)
	mpstruc (99)
	OPM (72)

Symmetry Type

	Asymmetric (118)
	Cyclic (59)

SCOP Classification

	Membrane and cell surface proteins and peptides (47)
	Artifacts (19)
	All alpha proteins (4)
	Alpha and beta proteins (a/b) (2)
	All beta proteins (1)

AllSelected

1 to 25 of 173 Structures

Page 1 of 7

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1PIR \| pdb_00001pir	Download File View File

SOLUTION STRUCTURE OF PORCINE PANCREATIC PHOSPHOLIPASE A2

Van Den Berg, B.D., Tessari, M., De Haas, G.H., Verheij, H.M., Boelens, R., Kaptein, R.

(1995) EMBO J 14: 4123-4131

Released	1995-06-03
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA

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1PIS \| pdb_00001pis	Download File View File

SOLUTION STRUCTURE OF PORCINE PANCREATIC PHOSPHOLIPASE A2

Van Den Berg, B.D., Tessari, M., De Haas, G.H., Verheij, H.M., Boelens, R., Kaptein, R.

(1995) EMBO J 14: 4123-4131

Released	1995-06-03
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA

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1RH5 \| pdb_00001rh5	Download File View File

The structure of a protein conducting channel

van den Berg, B., Clemons Jr., W.M., Collinson, I., Modis, Y., Hartmann, E., Harrison, S.C., Rapoport, T.A.

(2004) Nature 427: 36-44

Released	2004-01-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Preprotein translocase secE subunit (protein) Preprotein translocase secY subunit (protein) SecBeta (protein)

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1RHZ \| pdb_00001rhz	Download File View File

The structure of a protein conducting channel

van den Berg, B., Clemons Jr., W.M., Collinson, I., Modis, Y., Hartmann, E., Harrison, S.C., Rapoport, T.A.

(2004) Nature 427: 36-44

Released	2004-01-06
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Preprotein translocase secE subunit (protein) Preprotein translocase secY subunit (protein) SecBeta (protein)

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1SFV \| pdb_00001sfv	Download File View File

PORCINE PANCREAS PHOSPHOLIPASE A2, NMR, MINIMIZED AVERAGE STRUCTURE

Van Den Berg, B., Tessari, M., Boelens, R., Dijkman, R., Kaptein, R., De Haas, G.H., Verheij, H.M.

(1995) J Biomol NMR 5: 110-121

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA

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1SFW \| pdb_00001sfw	Download File View File

PORCINE PANCREAS PHOSPHOLIPASE A2, NMR, 18 STRUCTURES

Van Den Berg, B., Tessari, M., Boelens, R., Dijkman, R., Kaptein, R., De Haas, G.H., Verheij, H.M.

(1995) J Biomol NMR 5: 110-121

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA

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1T16 \| pdb_00001t16	Download File View File

Crystal structure of the bacterial fatty acid transporter FadL from Escherichia coli

van den Berg, B., Black, P.N., Clemons Jr., W.M., Rapoport, T.A.

(2004) Science 304: 1506-1509

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)
Unique Ligands	C8E, CU, LDA

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1T1L \| pdb_00001t1l	Download File View File

Crystal structure of the long-chain fatty acid transporter FadL

van den Berg, B., Black, P.N., Clemons Jr., W.M., Rapoport, T.A.

(2004) Science 304: 1506-1509

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)
Unique Ligands	LDA

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1TLW \| pdb_00001tlw	Download File View File

Tsx structure complexed with thymidine

Ye, J., van den Berg, B.

(2004) EMBO J 23: 3187-3195

Released	2004-08-24
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	Nucleoside-specific channel-forming protein tsx (protein)
Unique Ligands	THM

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1TLY \| pdb_00001tly	Download File View File

Tsx structure

Ye, J., van den Berg, B.

(2004) EMBO J 23: 3187-3195

Released	2004-08-24
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Escherichia coli
Macromolecule	Nucleoside-specific channel-forming protein tsx (protein)

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1TLZ \| pdb_00001tlz	Download File View File

Tsx structure complexed with uridine

Ye, J., van den Berg, B.

(2004) EMBO J 23: 3187-3195

Released	2004-08-24
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	Nucleoside-specific channel-forming protein tsx (protein)
Unique Ligands	URI

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2F1C \| pdb_00002f1c	Download File View File

Crystal structure of the monomeric porin OmpG

Subbarao, G.V., van den Berg, B.

(2006) J Mol Biology 360: 750-759

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein G (protein)
Unique Ligands	C8E

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2F1T \| pdb_00002f1t	Download File View File

Outer membrane protein OmpW

van den Berg, B.

(2006) J Biological Chem 281: 7568-7577

Released	2006-01-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein W (protein)
Unique Ligands	C8E, GOL, LDA

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2F1V \| pdb_00002f1v	Download File View File

Outer membrane protein OmpW

van den Berg, B.

(2006) J Biological Chem 281: 7568-7577

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein W (protein)
Unique Ligands	GOL

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2ODJ \| pdb_00002odj	Download File View File

Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa

Biswas, S., van den Berg, B.

(2007) Nat Struct Mol Biol 14: 1108-1109

Released	2007-10-16
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Porin D (protein)
Unique Ligands	C8E

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2QTK \| pdb_00002qtk	Download File View File

Crystal Structure of the outer membrane protein opdK from Pseudomonas aeruginosa

Biswas, S., Van den Berg, B.

(2008) Structure 16: 1027-1035

Released	2008-06-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Probable porin (protein)
Unique Ligands	C8E

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2R4L \| pdb_00002r4l	Download File View File

Crystal structure of the long-chain fatty acid transporter FadL mutant P34A

Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.

(2009) Nature 458: 367-370

Released	2008-09-16
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)
Unique Ligands	LDA

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2R4N \| pdb_00002r4n	Download File View File

Crystal structure of the long-chain fatty acid transporter FadL mutant N33A

Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.

(2009) Nature 458: 367-370

Released	2008-09-16
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)
Unique Ligands	LDA

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2R4O \| pdb_00002r4o	Download File View File

Crystal structure of the long-chain fatty acid transporter FadL mutant delta NPA

Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.

(2009) Nature 458: 367-370

Released	2008-09-16
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)
Unique Ligands	LDA

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2R4P \| pdb_00002r4p	Download File View File

Crystal structure of the long-chain fatty acid transporter FadL mutant G212E

Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.

(2009) Nature 458: 367-370

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)
Unique Ligands	LDA

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2R88 \| pdb_00002r88	Download File View File

Crystal structure of the long-chain fatty acid transporter FadL mutant delta S3 kink

Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.

(2009) Nature 458: 367-370

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)

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2R89 \| pdb_00002r89	Download File View File

Crystal structure of the long-chain fatty acid transporter FadL mutant delta N3

Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.

(2011) Proc Natl Acad Sci U S A 108: 10121-10126

Released	2008-09-23
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)

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2R8A \| pdb_00002r8a	Download File View File

Crystal structure of the long-chain fatty acid transporter FadL mutant delta N8

Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.

(2011) Proc Natl Acad Sci U S A 108: 10121-10126

Released	2008-09-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)
Unique Ligands	C8E

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2X27 \| pdb_00002x27	Download File View File

Crystal structure of the outer membrane protein OprG from Pseudomonas aeruginosa

Touw, D.S., Patel, D.R., van den Berg, B.

(2010) PLoS One 5: 15016

Released	2010-12-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	OUTER MEMBRANE PROTEIN OPRG (protein)
Unique Ligands	C8E, NI