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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yefanov, O."

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Tequatrovirus T4 (19)
	Mus musculus (6)
	Thiomonas intermedia K12 (5)
	Macaca mulatta (4)
	Homo sapiens (3)
	Human immunodeficiency virus 1 (2)
	Danio rerio (1)
	Enterobacteria phage RB55 (1)
	Escherichia phage T4 (1)
	Oncorhynchus mykiss (1)

More...

Taxonomy

	Duplodnaviria (21)
	Eukaryota (13)
	Bacteria (6)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (36)
	EPR (4)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (38)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (17)
	2.0 - 2.5 (8)
	2.5 - 3.0 (4)
	3.0 - 3.5 (4)
	4.0 - 4.5 (2)

Release Date

	2005 - 2009 (16)
	2010 - 2014 (7)
	2015 - 2019 (10)
	2020 - 2024 (5)

Enzyme Classification Name

Hydrolases (21)

Membrane Protein Annotation

	OPM (3)
	PDBTM (3)
	MemProtMD (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (25)
	Cyclic (13)

SCOP Classification

Alpha and beta proteins (a+b) (18)

AllSelected

1 to 25 of 38 Structures

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1ZUR \| pdb_00001zur	Download File View File

Crystal structure of spin labeled T4 Lysozyme (V131R1F)

Fleissner, M.R., Cascio, D., Sawaya, M.R., Hideg, K., Hubbell, W.L.

To be published

Released	2006-10-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	CL, R1F

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1ZWN \| pdb_00001zwn	Download File View File

Crystal structure of spin labeled T4 Lysozyme (V131R1B)

Fleissner, M.R., Cascio, D., Sawaya, M.R., Hideg, K., Hubbell, W.L.

To be published

Released	2006-10-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	AZI, CL, HED, R1B

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1ZYT \| pdb_00001zyt	Download File View File

Crystal structure of spin labeled T4 Lysozyme (A82R1)

Fleissner, M.R., Cascio, D., Sawaya, M.R., Hideg, K., Hubbell, W.L.

(2009) Protein Sci 18: 893-908

Released	2006-08-15
Method	X-RAY DIFFRACTION 1.7 Å EPR
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	AZI, CL, HED, MTN

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2A4T \| pdb_00002a4t	Download File View File

Crystal structure of spin labeled T4 Lysozyme (V131R7)

Fleissner, M.R., Cascio, D., Sawaya, M.R., Hideg, K., Hubbell, W.L.

To be published

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	AZI, CL, HED, R7A

Explore in 3D

2CUU \| pdb_00002cuu	Download File View File

Crystal structure of spin labeled T4 Lysozyme (V131R1)

Fleissner, M.R., Cascio, D., Sawaya, M.R., Hideg, K., Hubbell, W.L.

(2009) Protein Sci 18: 893-908

Released	2006-08-15
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	AZI, CL, HED, MTN

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2IGC \| pdb_00002igc	Download File View File

Structure of Spin labeled T4 Lysozyme Mutant T115R1A

Guo, Z., Cascio, D., Hideg, K., Hubbell, W.L.

(2007) Protein Sci 16: 1069-1086

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	MTN

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2NTG \| pdb_00002ntg	Download File View File

Structure of Spin-labeled T4 Lysozyme Mutant T115R7

Guo, Z., Cascio, D., Hideg, K., Hubbell, W.L.

(2007) Protein Sci 16: 1069-1086

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	BME, R7A

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2NTH \| pdb_00002nth	Download File View File

Structure of Spin-labeled T4 Lysozyme Mutant L118R1

Guo, Z., Cascio, D., Hideg, K., Hubbell, W.L.

(2007) Protein Sci 16: 1069-1086

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	MTN

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2OU8 \| pdb_00002ou8	Download File View File

Structure of Spin-labeled T4 Lysozyme Mutant T115R1 at Room Temperature

Guo, Z., Cascio, D., Hideg, K., Hubbell, W.L.

(2007) Protein Sci 16: 1069-1086

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.8 Å EPR
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	BME, MTN

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2OU9 \| pdb_00002ou9	Download File View File

Structure of Spin-labeled T4 Lysozyme Mutant T115R1/R119A

Guo, Z., Cascio, D., Hideg, K., Hubbell, W.L.

(2007) Protein Sci 16: 1069-1086

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	MTN

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2Q9D \| pdb_00002q9d	Download File View File

Structure of spin-labeled T4 lysozyme mutant A41R1

Guo, Z., Cascio, D., Hideg, K., Hubbell, W.L.

(2008) Protein Sci 17: 228-239

Released	2007-06-26
Method	X-RAY DIFFRACTION 1.4 Å EPR
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	BME, MTN

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2Q9E \| pdb_00002q9e	Download File View File

Structure of spin-labeled T4 lysozyme mutant S44R1

Guo, Z., Cascio, D., Hideg, K., Hubbell, W.L.

(2008) Protein Sci 17: 228-239

Released	2007-06-26
Method	X-RAY DIFFRACTION 2.1 Å EPR
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	HED, MTN

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3G3V \| pdb_00003g3v	Download File View File

Crystal structure of spin labeled T4 Lysozyme (V131R1) at 291 K

Fleissner, M.R., Cascio, D., Hubbell, W.L.

(2009) Protein Sci 18: 893-908

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	AZI, CL, HED, MTN

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3G3W \| pdb_00003g3w	Download File View File

Crystal structure of spin labeled T4 Lysozyme (T151R1) at 291 K

Fleissner, M.R., Cascio, D., Hubbell, W.L.

(2009) Protein Sci 18: 893-908

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	AZI, CL, HED, MTN

Explore in 3D

3G3X \| pdb_00003g3x	Download File View File

Crystal structure of spin labeled T4 Lysozyme (T151R1) at 100 K

Fleissner, M.R., Cascio, D., Hubbell, W.L.

(2009) Protein Sci 18: 893-908

Released	2009-05-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	AZI, CL, HED, MTN

Explore in 3D

3HWL \| pdb_00003hwl	Download File View File

Crystal Structure of T4 lysozyme with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 131

Fleissner, M.R., Cascio, D., Schultz, P.G., Hubbell, W.L.

(2009) Proc Natl Acad Sci U S A 106: 21637-21642

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	AZI, CL

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3K2R \| pdb_00003k2r	Download File View File

Crystal Structure of Spin Labeled T4 Lysozyme Mutant K65V1/R76V1

Toledo Warshaviak, D., Cascio, D., Khramtsov, V.V., Hubbell, W.L.

To be published

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	CL, HEZ, K, V1A

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3L2X \| pdb_00003l2x	Download File View File

Crystal Structure of Spin Labeled T4 Lysozyme Mutant 115-119RX

Fleissner, M.R., Cascio, D., Hubbell, W.L.

To be published

Released	2011-01-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	AZI, BME, CL, HED, RXR

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4BUM \| pdb_00004bum	Download File View File

Crystal structure of the Voltage Dependant Anion Channel 2 from zebrafish.

Paz, A., Schredelseker, J., Abramson, J.

(2014) J Biological Chem 289: 12566

Released	2014-03-26
Method	X-RAY DIFFRACTION 2.801 Å
Organisms	Danio rerio
Macromolecule	VOLTAGE-DEPENDENT ANION CHANNEL 2 (protein)
Unique Ligands	LDA

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4NQQ \| pdb_00004nqq	Download File View File

Crystal structure of mouse P-cadherin extracellular domains EC1-EC2

Brasch, J., Shapiro, L.

(2014) Proc Natl Acad Sci U S A 111: E4175-E4184

Released	2014-09-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus
Macromolecule	Cadherin-3 (protein)
Unique Ligands	CA, CU

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4NUM \| pdb_00004num	Download File View File

Crystal structure of mouse N-cadherin EC1-2 A78SI92M

Jin, X.

(2014) Proc Natl Acad Sci U S A 111: E4175-E4184

Released	2014-09-24
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Mus musculus
Macromolecule	Cadherin-2 (protein)
Unique Ligands	CA

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4NUP \| pdb_00004nup	Download File View File

Crystal structure of mouse N-cadherin EC1-2 with AA insertion between residues 2 and 3

Jin, X.

(2014) Proc Natl Acad Sci U S A 111: E4175-E4184

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	N-CADHERIN EC1-2 (protein)
Unique Ligands	CA

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4NUQ \| pdb_00004nuq	Download File View File

Crystal structure of mouse N-cadherin EC1-2 W2F

Jin, X.

(2014) Proc Natl Acad Sci U S A 111: E4175-E4184

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.116 Å
Organisms	Mus musculus
Macromolecule	Cadherin-2 (protein)
Unique Ligands	CA

Explore in 3D

4ZWJ \| pdb_00004zwj	Download File View File

Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser

Kang, Y., Zhou, X.E., Gao, X., He, Y., Liu, W., Ishchenko, A., Barty, A., White, T.A., Yefanov, O., Han, G.W., Xu, Q., de Waal, P.W., Ke, J., Tan, M.H.E., Zhang, C., Moeller, A., West, G.M., Pascal, B., Eps, N.V., Caro, L.N., Vishnivetskiy, S.A., Lee, R.J., Suino-Powell, K.M., Gu, X., Pal, K., Ma, J., Zhi, X., Boutet, S., Williams, G.J., Messerschmidt, M., Gati, C., Zatsepin, N.A., Wang, D., James, D., Basu, S., Roy-Chowdhury, S., Conrad, C., Coe, J., Liu, H., Lisova, S., Kupitz, C., Grotjohann, I., Fromme, R., Jiang, Y., Tan, M., Yang, H., Li, J., Wang, M., Zheng, Z., Li, D., Howe, N., Zhao, Y., Standfuss, J., Diederichs, K., Dong, Y., Potter, C.S., Carragher, B., Caffrey, M., Jiang, H., Chapman, H.N., Spence, J.C.H., Fromme, P., Weierstall, U., Ernst, O.P., Katritch, V., Gurevich, V.V., Griffin, P.R., Hubbell, W.L., Stevens, R.C., Cherezov, V., Melcher, K., Xu, H.E., GPCR Network (GPCR)

(2015) Nature 523: 561-567

Released	2015-07-29
Method	X-RAY DIFFRACTION 3.302 Å
Organisms	Homo sapiens Mus musculus Tequatrovirus T4
Macromolecule	Chimera protein of human Rhodopsin, mouse S-arrestin, and T4 Endolysin (protein)

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5D4K \| pdb_00005d4k	Download File View File

Crystal structure of the human polymeric Ig receptor (pIgR) ectodomain

Stadtmueller, B.M., Bjorkman, P.J.

(2016) Elife 5:

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.599 Å
Organisms	Homo sapiens
Macromolecule	Polymeric immunoglobulin receptor (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	FUC, NAG

1 to 25 of 38 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZUR | pdb_00001zur

1ZWN | pdb_00001zwn

1ZYT | pdb_00001zyt

2A4T | pdb_00002a4t

2CUU | pdb_00002cuu

2IGC | pdb_00002igc

2NTG | pdb_00002ntg

2NTH | pdb_00002nth

2OU8 | pdb_00002ou8

2OU9 | pdb_00002ou9

2Q9D | pdb_00002q9d

2Q9E | pdb_00002q9e

3G3V | pdb_00003g3v

3G3W | pdb_00003g3w

3G3X | pdb_00003g3x

3HWL | pdb_00003hwl

3K2R | pdb_00003k2r

3L2X | pdb_00003l2x

4BUM | pdb_00004bum

4NQQ | pdb_00004nqq

4NUM | pdb_00004num

4NUP | pdb_00004nup

4NUQ | pdb_00004nuq

4ZWJ | pdb_00004zwj

5D4K | pdb_00005d4k