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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xu, J."

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Search Summary

This query matches 740 Structures.

Refinements

Structure Determination Methodology

experimental (740)

Scientific Name of Source Organism

	Homo sapiens (262)
	Tequatrovirus T4 (63)
	synthetic construct (61)
	Mus musculus (46)
	Escherichia coli K-12 (32)
	Escherichia coli (30)
	Saccharomyces cerevisiae S288C (27)
	Severe acute respiratory syndrome coronavirus 2 (24)
	Saccharomyces cerevisiae (17)
	Bacillus subtilis (14)

More...

Taxonomy

	Eukaryota (395)
	Bacteria (217)
	Duplodnaviria (79)
	other sequences (61)
	Riboviria (51)
	Archaea (12)
	Varidnaviria (3)
	Monodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (500)
	ELECTRON MICROSCOPY (229)
	SOLUTION NMR (11)

Polymer Entity Type

	Protein (737)
	DNA (58)
	RNA (40)

Refinement Resolution (Å)

	1.0 - 1.5 (20)
	1.5 - 2.0 (178)
	2.0 - 2.5 (165)
	2.5 - 3.0 (158)
	3.0 - 3.5 (102)
	3.5 - 4.0 (79)
	4.0 - 4.5 (13)
	> 4.5 (14)

Release Date

	1990 - 1994 (19)
	1995 - 1999 (31)
	2000 - 2004 (96)
	2005 - 2009 (19)
	2010 - 2014 (57)
	2015 - 2019 (126)
	2020 - 2024 (358)
	2025 - 2029 (34)

Enzyme Classification Name

	Hydrolases (202)
	Transferases (126)
	Oxidoreductases (43)
	Isomerases (33)
	Translocases (28)
	Ligases (27)
	Lyases (24)

Membrane Protein Annotation

	PDBTM (102)
	mpstruc (76)
	MemProtMD (60)
	OPM (58)

Symmetry Type

	Asymmetric (482)
	Cyclic (232)
	Icosahedral (17)
	Dihedral (14)
	Helical (13)
	Tetrahedral (4)
	Octahedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (144)
	Artifacts (87)
	Alpha and beta proteins (a/b) (71)
	All beta proteins (46)
	All alpha proteins (61)
	Membrane and cell surface proteins and peptides (14)
	Small proteins (5)
	Coiled coil proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 740 Structures

Page 1 of 30

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118L \| pdb_0000118l	Download File View File

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME

Blaber, M., Matthews, B.W.

(1993) Biochemistry 32: 11363-11373

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

119L \| pdb_0000119l	Download File View File

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME

Blaber, M., Matthews, B.W.

(1993) Biochemistry 32: 11363-11373

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

120L \| pdb_0000120l	Download File View File

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME

Blaber, M., Matthews, B.W.

(1993) Biochemistry 32: 11363-11373

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

122L \| pdb_0000122l	Download File View File

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME

Blaber, M., Matthews, B.W.

(1993) Biochemistry 32: 11363-11373

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

123L \| pdb_0000123l	Download File View File

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME

Blaber, M., Matthews, B.W.

(1993) Biochemistry 32: 11363-11373

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

125L \| pdb_0000125l	Download File View File

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME

Blaber, M., Matthews, B.W.

(1993) Biochemistry 32: 11363-11373

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

126L \| pdb_0000126l	Download File View File

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME

Blaber, M., Matthews, B.W.

(1993) Biochemistry 32: 11363-11373

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

127L \| pdb_0000127l	Download File View File

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME

Blaber, M., Matthews, B.W.

(1993) Biochemistry 32: 11363-11373

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

128L \| pdb_0000128l	Download File View File

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME

Blaber, M., Matthews, B.W.

(1993) Biochemistry 32: 11363-11373

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

140L \| pdb_0000140l	Download File View File

ROLE OF BACKBONE FLEXIBILITY IN THE ACCOMMODATION OF VARIANTS THAT REPACK THE CORE OF T4 LYSOZYME

Baldwin, E., Matthews, B.W.

(1993) Science 262: 1715-1718

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

141L \| pdb_0000141l	Download File View File

ROLE OF BACKBONE FLEXIBILITY IN THE ACCOMMODATION OF VARIANTS THAT REPACK THE CORE OF T4 LYSOZYME

Baldwin, E., Matthews, B.W.

(1993) Science 262: 1715-1718

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

142L \| pdb_0000142l	Download File View File

ROLE OF BACKBONE FLEXIBILITY IN THE ACCOMMODATION OF VARIANTS THAT REPACK THE CORE OF T4 LYSOZYME

Baldwin, E., Matthews, B.W.

(1993) Science 262: 1715-1718

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

143L \| pdb_0000143l	Download File View File

ROLE OF BACKBONE FLEXIBILITY IN THE ACCOMMODATION OF VARIANTS THAT REPACK THE CORE OF T4 LYSOZYME

Baldwin, E., Matthews, B.W.

(1993) Science 262: 1715-1718

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

144L \| pdb_0000144l	Download File View File

ROLE OF BACKBONE FLEXIBILITY IN THE ACCOMMODATION OF VARIANTS THAT REPACK THE CORE OF T4 LYSOZYME

Baldwin, E., Matthews, B.W.

(1993) Science 262: 1715-1718

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

145L \| pdb_0000145l	Download File View File

ROLE OF BACKBONE FLEXIBILITY IN THE ACCOMMODATION OF VARIANTS THAT REPACK THE CORE OF T4 LYSOZYME

Baldwin, E., Matthews, B.W.

(1993) Science 262: 1715-1718

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME

Explore in 3D

146L \| pdb_0000146l	Download File View File

ROLE OF BACKBONE FLEXIBILITY IN THE ACCOMMODATION OF VARIANTS THAT REPACK THE CORE OF T4 LYSOZYME

Baldwin, E., Matthews, B.W.

(1993) Science 262: 1715-1718

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

147L \| pdb_0000147l	Download File View File

ROLE OF BACKBONE FLEXIBILITY IN THE ACCOMMODATION OF VARIANTS THAT REPACK THE CORE OF T4 LYSOZYME

Baldwin, E., Matthews, B.W.

(1993) Science 262: 1715-1718

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

195L \| pdb_0000195l	Download File View File

THERMODYNAMIC AND STRUCTURAL COMPENSATION IN "SIZE-SWITCH" CORE-REPACKING VARIANTS OF T4 LYSOZYME

Baldwin, E., Xu, J., Hajiseyedjavadi, O., Matthews, B.W.

(1996) J Mol Biology 259: 542-559

Released	1996-03-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tequatrovirus T4
Macromolecule	LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

196L \| pdb_0000196l	Download File View File

THERMODYNAMIC AND STRUCTURAL COMPENSATION IN "SIZE-SWITCH" CORE-REPACKING VARIANTS OF T4 LYSOZYME

Baldwin, E., Xu, J., Hajiseyedjavadi, O., Matthews, B.W.

(1996) J Mol Biology 259: 542-559

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tequatrovirus T4
Macromolecule	LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

197L \| pdb_0000197l	Download File View File

THERMODYNAMIC AND STRUCTURAL COMPENSATION IN "SIZE-SWITCH" CORE-REPACKING VARIANTS OF T4 LYSOZYME

Baldwin, E., Xu, J., Hajiseyedjavadi, O., Matthews, B.W.

(1996) J Mol Biology 259: 542-559

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tequatrovirus T4
Macromolecule	LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

198L \| pdb_0000198l	Download File View File

THERMODYNAMIC AND STRUCTURAL COMPENSATION IN "SIZE-SWITCH" CORE-REPACKING VARIANTS OF T4 LYSOZYME

Baldwin, E., Xu, J., Hajiseyedjavadi, O., Matthews, B.W.

(1996) J Mol Biology 259: 542-559

Released	1996-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

199L \| pdb_0000199l	Download File View File

THERMODYNAMIC AND STRUCTURAL COMPENSATION IN "SIZE-SWITCH" CORE-REPACKING VARIANTS OF T4 LYSOZYME

Baldwin, E., Xu, J., Hajiseyedjavadi, O., Matthews, B.W.

(1996) J Mol Biology 259: 542-559

Released	1996-03-08
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Tequatrovirus T4
Macromolecule	LYSOZYME (protein)
Unique Ligands	BME, CL

Explore in 3D

1C1E \| pdb_00001c1e	Download File View File

CRYSTAL STRUCTURE OF A DIELS-ALDERASE CATALYTIC ANTIBODY 1E9 IN COMPLEX WITH ITS HAPTEN

Xu, J., Wilson, I.A.

(1999) Science 286: 2345-2348

Released	2000-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	CATALYTIC ANTIBODY 1E9 (HEAVY CHAIN) (protein) CATALYTIC ANTIBODY 1E9 (LIGHT CHAIN) (protein)
Unique Ligands	ENH, MLT