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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xiao, H."

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Search Summary

This query matches 239 Structures.

Refinements

Structure Determination Methodology

experimental (239)

Scientific Name of Source Organism

	Homo sapiens (64)
	Influenza A virus (A/duck/Czechoslovakia/1956(H4N6)) (13)
	Influenza A virus (12)
	Influenza A virus (A/Vietnam/1194/2004(H5N1)) (11)
	Escherichia phage T7 (10)
	Plasmodium falciparum 3D7 (9)
	Severe acute respiratory syndrome coronavirus 2 (9)
	Escherichia phage T5 (7)
	Influenza A virus (A/turkey/Turkey/1/2005(H5N1)) (7)
	Oryctolagus cuniculus (7)

More...

Taxonomy

	Eukaryota (102)
	Riboviria (90)
	Duplodnaviria (42)
	Bacteria (27)
	Varidnaviria (2)
	other sequences (2)
	Viruses incertae sedis (1)

Experimental Method

	X-RAY DIFFRACTION (176)
	ELECTRON MICROSCOPY (62)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (239)
	RNA (5)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (32)
	2.0 - 2.5 (73)
	2.5 - 3.0 (54)
	3.0 - 3.5 (35)
	3.5 - 4.0 (25)
	4.0 - 4.5 (6)
	> 4.5 (7)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (9)
	2010 - 2014 (36)
	2015 - 2019 (68)
	2020 - 2024 (107)
	2025 - 2029 (14)

Enzyme Classification Name

	Hydrolases (44)
	Transferases (19)
	Oxidoreductases (6)
	Lyases (3)

Membrane Protein Annotation

	PDBTM (4)
	mpstruc (4)
	MemProtMD (3)
	OPM (2)

Symmetry Type

	Asymmetric (103)
	Cyclic (135)
	Dihedral (6)
	Icosahedral (1)
	Octahedral (1)

SCOP Classification

	All beta proteins (81)
	Coiled coil proteins (49)
	Artifacts (28)
	Alpha and beta proteins (a+b) (19)
	Membrane and cell surface proteins and peptides (7)
	Alpha and beta proteins (a/b) (2)
	All alpha proteins (4)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 239 Structures

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1NU4 \| pdb_00001nu4	Download File View File

U1A RNA binding domain at 1.8 angstrom resolution reveals a pre-organized C-terminal helix

Rupert, P.B., Xiao, H., Ferre-D'Amare, A.R.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1521-1524

Released	2003-02-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	U1A RNA binding domain (protein)
Unique Ligands	MG, MLA

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1SSW \| pdb_00001ssw	Download File View File

Crystal structure of phage T4 lysozyme mutant Y24A/Y25A/T26A/I27A/C54T/C97A

He, M.M., Baase, W.A., Xiao, H., Heinz, D.W., Matthews, B.W.

(2004) Protein Sci 13: 2716-2724

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	BME

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1SSY \| pdb_00001ssy	Download File View File

Crystal structure of phage T4 lysozyme mutant G28A/I29A/G30A/C54T/C97A

He, M.M., Baase, W.A., Xiao, H., Heinz, D.W., Matthews, B.W.

(2004) Protein Sci 13: 2716-2724

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)

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1T8F \| pdb_00001t8f	Download File View File

Crystal structure of phage T4 lysozyme mutant R14A/K16A/I17A/K19A/T21A/E22A/C54T/C97A

He, M.M., Wood, Z.A., Baase, W.A., Xiao, H., Matthews, B.W.

(2004) Protein Sci 13: 2716-2724

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	BME, CL

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1T8G \| pdb_00001t8g	Download File View File

Crystal structure of phage T4 lysozyme mutant L32A/L33A/T34A/C54T/C97A/E108V

He, M.M., Wood, Z.A., Baase, W.A., Xiao, H., Matthews, B.W.

(2004) Protein Sci 13: 2716-2724

Released	2004-10-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	BME, CL, PO4

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2L5A \| pdb_00002l5a	Download File View File

Structural basis for recognition of centromere specific histone H3 variant by nonhistone Scm3

Zhou, Z., Feng, H., Zhou, B., Ghirlando, R., Hu, K., Zwolak, A., Jenkins, L., Xiao, H., Tjandra, N., Wu, C., Bai, Y.

(2011) Nature 472: 234-237

Released	2011-03-16
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Histone H3-like centromeric protein CSE4, Protein SCM3, Histone H4 (protein)

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2OYP \| pdb_00002oyp	Download File View File

T Cell Immunoglobulin Mucin-3 Crystal Structure Revealed a Galectin-9-independent Binding Surface

Cao, E., Ramagopal, U.A., Fedorov, A.A., Fedorov, E.V., Nathenson, S.G., Almo, S.C.

(2007) Immunity 26: 311-321

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.952 Å
Organisms	Mus musculus
Macromolecule	Hepatitis A virus cellular receptor 2 (protein)
Unique Ligands	SO4

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3CUL \| pdb_00003cul	Download File View File

Aminoacyl-tRNA synthetase ribozyme

Xiao, H., Murakami, H., Suga, H., Ferre-D'Amare, A.R.

(2008) Nature 454: 358-361

Released	2008-06-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) RNA (92-MER) (nucleic acid)
Unique Ligands	K, MG

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3CUN \| pdb_00003cun	Download File View File

Aminoacyl-tRNA synthetase ribozyme

Xiao, H., Murakami, H., Suga, H., Ferre-D'Amare, A.R.

(2008) Nature 454: 358-361

Released	2008-06-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) RNA (92-MER) (nucleic acid)
Unique Ligands	CO, K, MG

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3EGZ \| pdb_00003egz	Download File View File

Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch

Xiao, H., Edwards, T.E., Ferre-D'Amare, A.R.

(2008) Chem Biol 15: 1125-1137

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Tetracycline aptamer and artificial riboswitch (nucleic acid)
Unique Ligands	CTC, MG

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3FNS \| pdb_00003fns	Download File View File

Crystal structure of histo-aspartic protease (HAP) from Plasmodium Falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2009) J Mol Biology 388: 520-540

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	HAP protein (protein)
Unique Ligands	ZN

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3FNT \| pdb_00003fnt	Download File View File

Crystal structure of pepstatin A bound histo-aspartic protease (HAP) from Plasmodium falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2009) J Mol Biology 388: 520-540

Released	2009-05-12
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Plasmodium falciparum 3D7 Streptomyces argenteolus subsp. toyonakensis
Macromolecule	HAP protein (protein) Inhibitor, (IVA)VV(STA)A(STA) (protein)
Unique Ligands	EDO

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3FNU \| pdb_00003fnu	Download File View File

Crystal structure of KNI-10006 bound histo-aspartic protease (HAP) from Plasmodium falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2009) J Mol Biology 388: 520-540

Released	2009-05-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	HAP protein (protein)
Unique Ligands	006

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3KCS \| pdb_00003kcs	Download File View File

Crystal structure of PAmCherry1 in the dark state

Malashkevich, V.N., Subach, F.V., Zencheck, W.D., Xiao, H., Filonov, G.S., Almo, S.C., Verkhusha, V.V.

(2009) Proc Natl Acad Sci U S A 106: 21097-21102

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Discosoma sp.
Macromolecule	PAmCherry1 protein (protein)

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3KCT \| pdb_00003kct	Download File View File

CRYSTAL STRUCTURE OF PAmCherry1 in the photoactivated state

Malashkevich, V.N., Subach, F.V., Zencheck, W.D., Xiao, H., Filonov, G.S., Almo, S.C., Verkhusha, V.V.

(2009) Proc Natl Acad Sci U S A 106: 21097-21102

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Discosoma sp.
Macromolecule	PAmCherry1 protein (protein)

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3QRV \| pdb_00003qrv	Download File View File

Crystal structure of plasmepsin I (PMI) from Plasmodium falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2011) J Struct Biol 175: 73-84

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Plasmodium falciparum
Macromolecule	Plasmepsin-1 (protein)

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3QS1 \| pdb_00003qs1	Download File View File

Crystal structure of KNI-10006 complex of Plasmepsin I (PMI) from Plasmodium falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2011) J Struct Biol 175: 73-84

Released	2011-05-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Plasmodium falciparum
Macromolecule	Plasmepsin-1 (protein)
Unique Ligands	006, GOL

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3QVC \| pdb_00003qvc	Download File View File

Crystal structure of histo-aspartic protease (HAP) zymogen from Plasmodium falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2011) Biochemistry 50: 8862-8879

Released	2011-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Plasmodium falciparum
Macromolecule	Histo-aspartic protease (protein)
Unique Ligands	EDO

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3QVI \| pdb_00003qvi	Download File View File

Crystal structure of KNI-10395 bound histo-aspartic protease (HAP) from Plasmodium falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2011) Biochemistry 50: 8862-8879

Released	2011-10-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Plasmodium falciparum
Macromolecule	Histo-aspartic protease (protein)
Unique Ligands	ACT, EDO, K95, NA, PG4, PG5

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4BGW \| pdb_00004bgw	Download File View File

Crystal Structure of H5 (VN1194) Influenza Haemagglutinin

Xiong, X., Coombs, P., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Influenza A virus (A/Vietnam/1194/2004(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	EPE, NAG
Unique branched monosaccharides	NAG

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4BGX \| pdb_00004bgx	Download File View File

H5 (VN1194) Influenza Virus Haemagglutinin in Complex with Human Receptor Analogue 6'-SLN

Xiong, X., Coombs, P., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Influenza A virus (A/Vietnam/1194/2004(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	EPE, NAG
Unique branched monosaccharides	GAL, SIA

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4BGY \| pdb_00004bgy	Download File View File

H5 (VN1194) Influenza Virus Haemagglutinin in Complex with Avian Receptor Analogue 3'-SLN

Xiong, X., Coombs, P., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Influenza A virus (A/Vietnam/1194/2004(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	EPE
Unique branched monosaccharides	GAL, NAG, SIA

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4BGZ \| pdb_00004bgz	Download File View File

Crystal Structure of H5 (tyTy) Influenza Virus Haemagglutinin

Xiong, X., Coombs, P., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Influenza A virus (A/turkey/Turkey/1/2005(H5N1))
Macromolecule	HAEMAGGLUTININ HA1 (protein) HEMAGGLUTININ (protein)
Unique Ligands	NAG, PO4

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4BH0 \| pdb_00004bh0	Download File View File

H5 (tyTy) Influenza Virus Haemagglutinin in Complex with Human Receptor Analogue 6'-SLN

Xiong, X., Coombs, P.J., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Influenza A virus (A/turkey/Turkey/1/2005(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	NAG, PO4
Unique branched monosaccharides	GAL, NAG, SIA

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4BH1 \| pdb_00004bh1	Download File View File

H5 (tyTy) Influenza Virus Haemagglutinin in Complex with Avian Receptor Analogue 3'-SLN

Xiong, X., Coombs, P.J., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Influenza A virus (A/turkey/Turkey/1/2005(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	NAG, PO4
Unique branched monosaccharides	GAL, NAG, SIA

1 to 25 of 239 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1NU4 | pdb_00001nu4

1SSW | pdb_00001ssw

1SSY | pdb_00001ssy

1T8F | pdb_00001t8f

1T8G | pdb_00001t8g

2L5A | pdb_00002l5a

2OYP | pdb_00002oyp

3CUL | pdb_00003cul

3CUN | pdb_00003cun

3EGZ | pdb_00003egz

3FNS | pdb_00003fns

3FNT | pdb_00003fnt

3FNU | pdb_00003fnu

3KCS | pdb_00003kcs

3KCT | pdb_00003kct

3QRV | pdb_00003qrv

3QS1 | pdb_00003qs1

3QVC | pdb_00003qvc

3QVI | pdb_00003qvi

4BGW | pdb_00004bgw

4BGX | pdb_00004bgx

4BGY | pdb_00004bgy

4BGZ | pdb_00004bgz

4BH0 | pdb_00004bh0

4BH1 | pdb_00004bh1