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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Vandekolk, T.H."

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Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	Homo sapiens (14)
	Staphylococcus aureus (7)
	Mus musculus (6)
	Arabidopsis thaliana (5)
	Brassica napus (4)
	Bos taurus (2)
	Fusarium oxysporum f. sp. pisi HDV247 (2)
	Conus geographus (1)
	Myxococcus xanthus (1)
	Novosphingobium capsulatum (1)

More...

Taxonomy

	Eukaryota (30)
	Bacteria (10)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (32)
	SOLUTION NMR (9)

Polymer Entity Type

Protein (41)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (10)
	2.5 - 3.0 (10)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (4)
	2000 - 2004 (6)
	2005 - 2009 (12)
	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (12)

Enzyme Classification Name

	Hydrolases (11)
	Transferases (5)

Symmetry Type

	Asymmetric (39)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	All beta proteins (21)
	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (2)
	All alpha proteins (1)
	Artifacts (1)
	Peptides (1)

AllSelected

1 to 25 of 41 Structures

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1AQK \| pdb_00001aqk	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A HUMAN FAB WITH HIGH AFFINITY FOR TETANUS TOXOID

Faber, C., Fan, Z., Edmundson, A.B.

(1998) Immunotechnology 3: 253-270

Released	1998-02-04
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	FAB B7-15A2 (protein)

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1B2W \| pdb_00001b2w	Download File View File

COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF A HUMANIZED AND A CHIMERIC FAB OF AN ANTI-GAMMA-INTERFERON ANTIBODY

Fan, Z., Shan, L., Goldsteen, B.Z., Guddat, L.W., Thakur, A., Landolfi, N.F., Co, M.S., Vasquez, M., Queen, C., Ramsland, P.A., Edmundson, A.B.

(1999) J Mol Recognit 12: 19-32

Released	1999-05-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	PROTEIN (ANTIBODY (HEAVY CHAIN)) (protein) PROTEIN (ANTIBODY (LIGHT CHAIN)) (protein)

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1B4J \| pdb_00001b4j	Download File View File

COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF A HUMANIZED AND A CHIMERIC FAB OF AN ANTI-GAMMA-INTERFERON ANTIBODY

Fan, Z., Shan, L., Goldsteen, B.Z., Guddat, L.W., Thakur, A., Landolfi, N.F., Co, M.S., Vasques, M., Queen, C., Ramsland, P.A., Edmundson, A.B.

(1999) J Mol Recognit 12: 19-32

Released	1999-06-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	ANTIBODY (protein)

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1CGS \| pdb_00001cgs	Download File View File

LOCAL AND TRANSMITTED CONFORMATIONAL CHANGES ON COMPLEXATION OF AN ANTI-SWEETENER FAB

Guddat, L.W., Shan, L., Edmundson, A.B.

(1994) J Mol Biology 236: 247-274

Released	1994-05-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	IGG2B-KAPPA NC6.8 FAB (HEAVY CHAIN) (protein) IGG2B-KAPPA NC6.8 FAB (LIGHT CHAIN) (protein)

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1DQL \| pdb_00001dql	Download File View File

CRYSTAL STRUCTURE OF AN UNLIGANDED (NATIVE) FV FROM A HUMAN IGM ANTI-PEPTIDE ANTIBODY

Ramsland, P.A., Shan, L., Moomaw, C.R., Slaughter, C.A., Guddat, L.W., Edmundson, A.B.

(2000) Mol Immunol 37: 295-310

Released	2000-10-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	IGM MEZ IMMUNOGLOBULIN (protein)

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1ETZ \| pdb_00001etz	Download File View File

THE THREE-DIMENSIONAL STRUCTURE OF AN ANTI-SWEETENER FAB, NC10.14, SHOWS THE EXTENT OF STRUCTURAL DIVERSITY IN ANTIGEN RECOGNITION BY IMMUNOGLOBULINS

Guddat, L.W., Shan, L., Broomell, C., Ramsland, P.A., Fan, Z., Anchin, J.M., Linthicum, D.S., Edmundson, A.B.

(2000) J Mol Biology 302: 853-872

Released	2000-10-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	FAB NC10.14 - HEAVY CHAIN (protein) FAB NC10.14 - LIGHT CHAIN (protein)
Unique Ligands	GAS

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1IGM \| pdb_00001igm	Download File View File

THREE DIMENSIONAL STRUCTURE OF AN FV FROM A HUMAN IGM IMMUNOGLOBULIN

Fan, Z.-C., Guddat, L.W., Edmundson, A.B.

(1992) J Mol Biology 228: 188-207

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	IGM-KAPPA POT FV (HEAVY CHAIN) (protein) IGM-KAPPA POT FV (LIGHT CHAIN) (protein)

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1JVK \| pdb_00001jvk	Download File View File

THREE-DIMENSIONAL STRUCTURE OF AN IMMUNOGLOBULIN LIGHT CHAIN DIMER ACTING AS A LETHAL AMYLOID PRECURSOR

Bourne, P.C., Ramsland, P.A., Shan, L., Fan, Z.-C., DeWitt, C.R., Shultz, B.B., Terzyan, S.S., Edmundson, A.B.

(2002) Acta Crystallogr D Biol Crystallogr 58: 815-823

Released	2002-05-03
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN LAMBDA LIGHT CHAIN (protein)

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1LGV \| pdb_00001lgv	Download File View File

Structure of a Human Bence-Jones Dimer Crystallized in U.S. Space Shuttle Mission STS-95: 100K

Terzyan, S.S., DeWitt, C.R., Ramsland, P.A., Bourne, P.C., Edmundson, A.B.

(2003) J Mol Recognit 16: 83-90

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN LAMBDA LIGHT CHAIN (protein)

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1LHZ \| pdb_00001lhz	Download File View File

Structure of a Human Bence-Jones Dimer Crystallized in U.S. Space Shuttle Mission STS-95: 293K

Terzyan, S.S., DeWitt, C.R., Ramsland, P.A., Bourne, P.C., Edmundson, A.B.

(2003) J Mol Recognit 16: 83-90

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN LAMBDA LIGHT CHAIN (protein)

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1NOT \| pdb_00001not	Download File View File

THE 1.2 ANGSTROM STRUCTURE OF G1 ALPHA CONOTOXIN

Guddat, L.W., Shan, L., Martin, J.L., Edmundson, A.B., Gray, W.R.

(1996) Biochemistry 35: 11329-11335

Released	1996-12-07
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Conus geographus
Macromolecule	GI ALPHA CONOTOXIN (protein)

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1RKN \| pdb_00001rkn	Download File View File

Solution structure of 1-110 fragment of Staphylococcal Nuclease with G88W mutation

Liu, D.S., Feng, Y.G., Ye, K.Q., Shan, L., Wang, J.F.

(2007) Biophys J 92: 2090-2107

Released	2004-12-07
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	Thermonuclease (protein)

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1U9M \| pdb_00001u9m	Download File View File

Crystal structure of F58W mutant of cytochrome b5

Shan, L., Lu, J.-X., Gan, J.-H., Wang, Y.-H., Huang, Z.-X., Xia, Z.-X.

(2005) Acta Crystallogr D Biol Crystallogr 61: 180-189

Released	2005-02-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	Cytochrome b5 (protein)
Unique Ligands	HEM

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1U9U \| pdb_00001u9u	Download File View File

Crystal structure of F58Y mutant of cytochrome b5

Shan, L., Lu, J.-X., Gan, J.-H., Wang, Y.-H., Huang, Z.-X., Xia, Z.-X.

(2005) Acta Crystallogr D Biol Crystallogr 61: 180-189

Released	2005-02-01
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Bos taurus
Macromolecule	Cytochrome b5 (protein)
Unique Ligands	HEM

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1XNX \| pdb_00001xnx	Download File View File

Crystal structure of constitutive androstane receptor

Fernandez, E.

(2004) Mol Cell 16: 907-917

Released	2005-01-04
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	constitutive androstane receptor (protein)
Unique Ligands	ATE

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1Y9X \| pdb_00001y9x	Download File View File

Solution structure of Archaeon DNA-binding protein ssh10b

Cui, Q., Tong, Y., Wang, J.

(2008) Biochemistry 47: 11212-11221

Released	2005-06-21
Method	SOLUTION NMR
Organisms	Saccharolobus shibatae
Macromolecule	DNA/RNA-binding protein Alba 1 (protein)

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1YR2 \| pdb_00001yr2	Download File View File

Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity

Shan, L., Mathews, I.I., Khosla, C.

(2005) Proc Natl Acad Sci U S A 102: 3599-3604

Released	2005-03-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Novosphingobium capsulatum
Macromolecule	prolyl oligopeptidase (protein)
Unique Ligands	GOL

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2BKL \| pdb_00002bkl	Download File View File

Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity

Khosla, C., Shan, L., Mathews, I.I.

(2005) Proc Natl Acad Sci U S A 102: 3599

Released	2005-03-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Myxococcus xanthus
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	MES, SO4, ZAH

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2CGR \| pdb_00002cgr	Download File View File

LOCAL AND TRANSMITTED CONFORMATIONAL CHANGES ON COMPLEXATION OF AN ANTI-SWEETENER FAB

Guddat, L.W., Shan, L., Edmundson, A.B.

(1994) J Mol Biology 236: 247-274

Released	1994-05-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	IGG2B-KAPPA NC6.8 FAB (HEAVY CHAIN) (protein) IGG2B-KAPPA NC6.8 FAB (LIGHT CHAIN) (protein)
Unique Ligands	GAS