RCSB PDB: Search

3MOR \| pdb_00003mor	Download File View File

Crystal structure of Cathepsin B from Trypanosoma Brucei

Cupelli, K., Stehle, T.

(2012) Nat Methods 9: 259-262

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Trypanosoma brucei
Macromolecule	Cathepsin B-like cysteine protease (protein)
Unique Ligands	CL, GOL, NA
Unique branched monosaccharides	NAG

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4AC5 \| pdb_00004ac5	Download File View File

Lipidic sponge phase crystal structure of the Bl. viridis reaction centre solved using serial femtosecond crystallography

Johansson, L.C., Arnlund, D., White, T.A., Katona, G., DePonte, D.P., Weierstall, U., Doak, R.B., Shoeman, R.L., Lomb, L., Malmerberg, E., Davidsson, J., Nass, K., Liang, M., Andreasson, J., Aquila, A., Bajt, S., Barthelmess, M., Barty, A., Bogan, M.J., Bostedt, C., Bozek, J.D., Caleman, C., Coffee, R., Coppola, N., Ekeberg, T., Epp, S.W., Erk, B., Fleckenstein, H., Foucar, L., Graafsma, H., Gumprecht, L., Hajdu, J., Hampton, C.Y., Hartmann, R., Hartmann, A., Hauser, G., Hirsemann, H., Holl, P., Hunter, M.S., Kassemeyer, S., Kimmel, N., Kirian, R.A., Maia, F.R.N.C., Marchesini, S., Martin, A.V., Reich, C., Rolles, D., Rudek, B., Rudenko, A., Schlichting, I., Schulz, J., Seibert, M.M., Sierra, R., Soltau, H., Starodub, D., Stellato, F., Stern, S., Struder, L., Timneanu, N., Ullrich, J., Wahlgren, W.Y., Wang, X., Weidenspointner, G., Wunderer, C., Fromme, P., Chapman, H.N., Spence, J.C.H., Neutze, R.

(2012) Nat Methods 9: 263

Released	2012-02-15
Method	X-RAY DIFFRACTION 8.2 Å
Organisms	Blastochloris viridis
Macromolecule	PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT (protein) REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCB, BPB, FE2, HEM, MQ7, NS5

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4CAS \| pdb_00004cas	Download File View File

Serial femtosecond crystallography structure of a photosynthetic reaction center

Johansson, L.C., Arnlund, D., Katona, G., White, T.A., Barty, A., DePonte, D.P., Shoeman, R.L., Wickstrand, C., Sharma, A., Williams, G.J., Aquila, A., Bogan, M.J., Caleman, C., Davidsson, J., Doak, R.B., Frank, M., Fromme, R., Galli, L., Grotjohann, I., Hunter, M.S., Kassemeyer, S., Kirian, R.A., Kupitz, C., Liang, M., Lomb, L., Malmerberg, E., Martin, A.V., Messerschmidt, M., Nass, K., Redecke, L., Seibert, M.M., Sjohamn, J., Steinbrener, J., Stellato, F., Wang, D., Wahlgren, W.Y., Weierstall, U., Westenhoff, S., Zatsepin, N.A., Boutet, S., Spence, J.C.H., Schlichting, I., Chapman, H.N., Fromme, P., Neutze, R.

(2013) Nat Commun 4: 2911-2911

Released	2013-12-25
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Blastochloris viridis
Macromolecule	PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT (protein) REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCL, BPB, DGA, FE2, HEC, MPG, MQ7, NS5, OTP, PO4

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4ET8 \| pdb_00004et8	Download File View File

Hen egg-white lysozyme solved from 40 fs free-electron laser pulse data

Boutet, S., Lomb, L., Williams, G., Barends, T., Aquila, A., Doak, R.B., Weierstall, U., DePonte, D., Steinbrener, J., Shoeman, R., Messerschmidt, M., Barty, A., White, T., Kassemeyer, S., Kirian, R., Seibert, M., Montanez, P., Kenney, C., Herbst, R., Hart, P., Pines, J., Haller, G., Gruner, S., Philllip, H., Tate, M., Hromalik, M., Koerner, L., van Bakel, N., Morse, J., Ghonsalves, W., Arnlund, D., Bogan, M., Calemann, C., Fromme, R., Hampton, C., Hunter, M., Johansson, L., Katona, G., Kupitz, C., Liang, M., Martin, A., Nass, K., Redecke, L., Stellato, F., Timneanu, N., Wang, D., Zatsepin, N., Schafer, D., Defever, K., Neutze, R., Fromme, P., Spence, J., Chapman, H., Schlichting, I.

(2012) Science 337: 362-364

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4ET9 \| pdb_00004et9	Download File View File

Hen egg-white lysozyme solved from 5 fs free-electron laser pulse data

Boutet, S., Lomb, L., Williams, G., Barends, T., Aquila, A., Doak, R.B., Weierstall, U., DePonte, D., Steinbrener, J., Shoeman, R., Messerschmidt, M., Barty, A., White, T., Kassemeyer, S., Kirian, R., Seibert, M., Montanez, P., Kenney, C., Herbst, R., Hart, P., Pines, J., Haller, G., Gruner, S., Philllip, H., Tate, M., Hromalik, M., Koerner, L., van Bakel, N., Morse, J., Ghonsalves, W., Arnlund, D., Bogan, M., Calemann, C., Fromme, R., Hampton, C., Hunter, M., Johansson, L., Katona, G., Kupitz, C., Liang, M., Martin, A., Nass, K., Redecke, L., Stellato, F., Timneanu, N., Wang, D., Zatsepin, N., Schafer, D., Defever, K., Neutze, R., Fromme, P., Spence, J., Chapman, H., Schlichting, I.

(2012) Science 337: 362-364

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4ETA \| pdb_00004eta	Download File View File

Lysozyme, room temperature, 400 kGy dose

Boutet, S., Lomb, L., Williams, G., Barends, T., Aquila, A., Doak, R.B., Weierstall, U., DePonte, D., Steinbrener, J., Shoeman, R., Messerschmidt, M., Barty, A., White, T., Kassemeyer, S., Kirian, R., Seibert, M., Montanez, P., Kenney, C., Herbst, R., Hart, P., Pines, J., Haller, G., Gruner, S., Philllip, H., Tate, M., Hromalik, M., Koerner, L., van Bakel, N., Morse, J., Ghonsalves, W., Arnlund, D., Bogan, M., Calemann, C., Fromme, R., Hampton, C., Hunter, M., Johansson, L., Katona, G., Kupitz, C., Liang, M., Martin, A., Nass, K., Redecke, L., Stellato, F., Timneanu, N., Wang, D., Zatsepin, N., Schafer, D., Defever, K., Neutze, R., Fromme, P., Spence, J., Chapman, H., Schlichting, I.

(2012) Science 337: 362-364

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

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4ETB \| pdb_00004etb	Download File View File

lysozyme, room temperature, 200 kGy dose

Boutet, S., Lomb, L., Williams, G., Barends, T., Aquila, A., Doak, R.B., Weierstall, U., DePonte, D., Steinbrener, J., Shoeman, R., Messerschmidt, M., Barty, A., White, T., Kassemeyer, S., Kirian, R., Seibert, M., Montanez, P., Kenney, C., Herbst, R., Hart, P., Pines, J., Haller, G., Gruner, S., Philllip, H., Tate, M., Hromalik, M., Koerner, L., van Bakel, N., Morse, J., Ghonsalves, W., Arnlund, D., Bogan, M., Calemann, C., Fromme, R., Hampton, C., Hunter, M., Johansson, L., Katona, G., Kupitz, C., Liang, M., Martin, A., Nass, K., Redecke, L., Stellato, F., Timneanu, N., Wang, D., Zatsepin, N., Schafer, D., Defever, K., Neutze, R., Fromme, P., Spence, J., Chapman, H., Schlichting, I.

(2012) Science 337: 362-364

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.908 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

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4ETC \| pdb_00004etc	Download File View File

Lysozyme, room temperature, 24 kGy dose

Boutet, S., Lomb, L., Williams, G., Barends, T., Aquila, A., Doak, R.B., Weierstall, U., DePonte, D., Steinbrener, J., Shoeman, R., Messerschmidt, M., Barty, A., White, T., Kassemeyer, S., Kirian, R., Seibert, M., Montanez, P., Kenney, C., Herbst, R., Hart, P., Pines, J., Haller, G., Gruner, S., Philllip, H., Tate, M., Hromalik, M., Koerner, L., van Bakel, N., Morse, J., Ghonsalves, W., Arnlund, D., Bogan, M., Calemann, C., Fromme, R., Hampton, C., Hunter, M., Johansson, L., Katona, G., Kupitz, C., Liang, M., Martin, A., Nass, K., Redecke, L., Stellato, F., Timneanu, N., Wang, D., Zatsepin, N., Schafer, D., Defever, K., Neutze, R., Fromme, P., Spence, J., Chapman, H., Schlichting, I.

(2012) Science 337: 362-364

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.906 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4ETD \| pdb_00004etd	Download File View File

Lysozyme, room-temperature, rotating anode, 0.0026 MGy

Boutet, S., Lomb, L., Williams, G., Barends, T., Aquila, A., Doak, R.B., Weierstall, U., DePonte, D., Steinbrener, J., Shoeman, R., Messerschmidt, M., Barty, A., White, T., Kassemeyer, S., Kirian, R., Seibert, M., Montanez, P., Kenney, C., Herbst, R., Hart, P., Pines, J., Haller, G., Gruner, S., Philllip, H., Tate, M., Hromalik, M., Koerner, L., van Bakel, N., Morse, J., Ghonsalves, W., Arnlund, D., Bogan, M., Calemann, C., Fromme, R., Hampton, C., Hunter, M., Johansson, L., Katona, G., Kupitz, C., Liang, M., Martin, A., Nass, K., Redecke, L., Stellato, F., Timneanu, N., Wang, D., Zatsepin, N., Schafer, D., Defever, K., Neutze, R., Fromme, P., Spence, J., Chapman, H., Schlichting, I.

(2012) Science 337: 362-364

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.904 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

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4ETE \| pdb_00004ete	Download File View File

Lysozyme, room-temperature, rotating anode, 0.0021 MGy

Boutet, S., Lomb, L., Williams, G., Barends, T., Aquila, A., Doak, R.B., Weierstall, U., DePonte, D., Steinbrener, J., Shoeman, R., Messerschmidt, M., Barty, A., White, T., Kassemeyer, S., Kirian, R., Seibert, M., Montanez, P., Kenney, C., Herbst, R., Hart, P., Pines, J., Haller, G., Gruner, S., Philllip, H., Tate, M., Hromalik, M., Koerner, L., van Bakel, N., Morse, J., Ghonsalves, W., Arnlund, D., Bogan, M., Calemann, C., Fromme, R., Hampton, C., Hunter, M., Johansson, L., Katona, G., Kupitz, C., Liang, M., Martin, A., Nass, K., Redecke, L., Stellato, F., Timneanu, N., Wang, D., Zatsepin, N., Schafer, D., Defever, K., Neutze, R., Fromme, P., Spence, J., Chapman, H., Schlichting, I.

(2012) Science 337: 362-364

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.905 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

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4HWY \| pdb_00004hwy	Download File View File

Trypanosoma brucei procathepsin B solved from 40 fs free-electron laser pulse data by serial femtosecond X-ray crystallography

Redecke, L., Nass, K., DePonte, D.P., White, T.A., Rehders, D., Barty, A., Stellato, F., Liang, M., Barends, T.R.M., Boutet, S., Williams, G.W., Messerschmidt, M., Seibert, M.M., Aquila, A., Arnlund, D., Bajt, S., Barth, T., Bogan, M.J., Caleman, C., Chao, T.-C., Doak, R.B., Fleckenstein, H., Frank, M., Fromme, R., Galli, L., Grotjohann, I., Hunter, M.S., Johansson, L.C., Kassemeyer, S., Katona, G., Kirian, R.A., Koopmann, R., Kupitz, C., Lomb, L., Martin, A.V., Mogk, S., Neutze, R., Shoemann, R.L., Steinbrener, J., Timneanu, N., Wang, D., Weierstall, U., Zatsepin, N.A., Spence, J.C.H., Fromme, P., Schlichting, I., Duszenko, M., Betzel, C., Chapman, H.

(2013) Science 339: 227-230

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trypanosoma brucei brucei TREU927
Macromolecule	Cysteine peptidase C (CPC) (protein)
Unique branched monosaccharides	BMA, NAG

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4N4Z \| pdb_00004n4z	Download File View File

Trypanosoma brucei procathepsin B structure solved by Serial Microcrystallography using synchrotron radiation

Gati, C., Bourenkov, G., Klinge, M., Rehders, D., Stellato, F., Oberthuer, D., White, T.A., Yevanov, O., Sommer, B.P., Mogk, S., Duszenko, M., Betzel, C., Schneider, T.R., Chapman, H.N., Redecke, L.

(2014) IUCrJ 1: 87-94

Released	2014-02-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Cysteine peptidase C (CPC) (protein)
Unique branched monosaccharides	BMA, NAG

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4O34 \| pdb_00004o34	Download File View File

Room temperature macromolecular serial crystallography using synchrotron radiation

Stellato, F., Oberthuer, D., Liang, M., Bean, R., Gati, C., Yefanov, O., Barty, A., Burkhardt, A., Fischer, P., Galli, L., Kirian, R.A., Mayer, J., Pannerselvam, S., Yoon, C.H., Chervinskii, F., Speller, E., White, T.A., Betzel, C., Meents, A., Chapman, H.N.

(2014) IUCrJ 1: 204-212

Released	2014-06-11
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4PBU \| pdb_00004pbu	Download File View File

Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state

Kupitz, C., Basu, S., Grotjohann, I., Fromme, R., Zatsepin, N., Rendek, K.N., Hunter, M., Shoeman, R.L., White, T.A., Wang, D., James, D., Yang, J.H., Cobb, D.E., Reeder, B., Sierra, R.G., Liu, H., Barty, A., Aquila, A., Deponte, D., Kirian, R.A., Bari, S., Bergkamp, J.J., Beyerlein, K., Bogan, M.J., Caleman, C., Chao, T.-C., Conrad, C.E., Davis, K.M., Fleckenstein, H., Galli, L., Hau-Riege, S.P., Kassemeyer, S., Laksmono, H., Liang, M., Lomb, L., Marchesini, S., Martin, A.V., Messerschmidt, M., Milathianaki, D., Nass, K., Ros, A., Roy-Chowdhury, S., Schmidt, K., Seibert, M., Steinbrener, J., Stellato, F., Yan, L., Yoon, C., Moore, T.A., Moore, A.L., Pushkar, Y., Williams, G.J., Boutet, S., Doak, R.B., Weierstall, U., Frank, M., Chapman, H.N., Spence, J.C.H., Fromme, P.

(2014) Nature 513: 261-265

Released	2014-07-16
Method	X-RAY DIFFRACTION 5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, MG, OEX, PHO, PL9, SQD

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4RVY \| pdb_00004rvy	Download File View File

Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3)

Kupitz, C., Basu, S., Grotjohann, I., Fromme, R., Zatsepin, N., Rendek, K.N., Hunter, M., Shoeman, R.L., White, T.A., Wang, D., James, D., Yang, J.-H., Cobb, D.E., Reeder, B., Sierra, R.G., Liu, H., Barty, A., Aquila, A., Deponte, D., Kirian, R., Bari, S., Bergkamp, J.J., Beyerlein, K., Bogan, M.J., Caleman, C., Chao, T.-C., Conrad, C.E., Davis, K.M., Fleckenstein, H., Galli, L., Hau-Riege, S.P., Kassemeyer, S., Laksmono, H., Liang, M., Lomb, L., Marchesini, S., Martin, A.V., Messerschmidt, M., Milathianaki, D., Nass, K., Ros, A., Roy-Chowdhury, S., Schmidt, K., Seibert, M., Steinbrener, J., Stellato, F., Yan, L., Yoon, C., Moore, T.A., Moore, A.L., Pushkar, Y., Williams, G.J., Boutet, S., Doak, R.B., Weierstall, U., Frank, M., Chapman, H.N., Spence, J.C.H., Fromme, P.

(2014) Nature 513: 261-265

Released	2015-11-04
Method	X-RAY DIFFRACTION 5.5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, MG, OEX, PHO, PL9, SQD

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5G0Z \| pdb_00005g0z	Download File View File

Structure of native granulovirus polyhedrin determined using an X-ray free-electron laser

Gati, C., Bunker, R.D., Oberthur, D., Metcalf, P., Henry, C.

(2017) Proc Natl Acad Sci U S A 114: 2247-2252

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Cydia pomonella granulovirus
Macromolecule	GRANULIN (protein)

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5G3X \| pdb_00005g3x	Download File View File

Structure of recombinant granulovirus polyhedrin

Bunker, R.D., Chiu, E., Metcalf, P.

(2017) Proc Natl Acad Sci U S A 114: 2247-2252

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Cydia pomonella granulovirus
Macromolecule	GRANULOVIRUS POLYHEDRIN (protein)

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6RFU \| pdb_00006rfu	Download File View File

In cellulo crystallization of Trypanosoma brucei IMP dehydrogenase enables the identification of ATP and GMP as genuine co-factors

Nass, K., Redecke, L., Perbandt, M., Yefanov, O., Gabdulkhakov, A., Duszenko, M., Chapman, H.N., Betzel, C.

(2020) Nat Commun 11: 620-620

Released	2020-02-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	5GP, ATP

3MOR | pdb_00003mor

Crystal structure of Cathepsin B from Trypanosoma Brucei

4AC5 | pdb_00004ac5

Lipidic sponge phase crystal structure of the Bl. viridis reaction centre solved using serial femtosecond crystallography

4CAS | pdb_00004cas

Serial femtosecond crystallography structure of a photosynthetic reaction center

4ET8 | pdb_00004et8

Hen egg-white lysozyme solved from 40 fs free-electron laser pulse data

4ET9 | pdb_00004et9

Hen egg-white lysozyme solved from 5 fs free-electron laser pulse data

4ETA | pdb_00004eta

Lysozyme, room temperature, 400 kGy dose

4ETB | pdb_00004etb

lysozyme, room temperature, 200 kGy dose

4ETC | pdb_00004etc

Lysozyme, room temperature, 24 kGy dose

4ETD | pdb_00004etd

Lysozyme, room-temperature, rotating anode, 0.0026 MGy

4ETE | pdb_00004ete

Lysozyme, room-temperature, rotating anode, 0.0021 MGy

4HWY | pdb_00004hwy

Trypanosoma brucei procathepsin B solved from 40 fs free-electron laser pulse data by serial femtosecond X-ray crystallography

4N4Z | pdb_00004n4z

Trypanosoma brucei procathepsin B structure solved by Serial Microcrystallography using synchrotron radiation

4O34 | pdb_00004o34

Room temperature macromolecular serial crystallography using synchrotron radiation

4PBU | pdb_00004pbu

Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state

4RVY | pdb_00004rvy

Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3)

5G0Z | pdb_00005g0z

Structure of native granulovirus polyhedrin determined using an X-ray free-electron laser

5G3X | pdb_00005g3x

Structure of recombinant granulovirus polyhedrin

6RFU | pdb_00006rfu

In cellulo crystallization of Trypanosoma brucei IMP dehydrogenase enables the identification of ATP and GMP as genuine co-factors

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3MOR | pdb_00003mor

4AC5 | pdb_00004ac5

4CAS | pdb_00004cas

4ET8 | pdb_00004et8

4ET9 | pdb_00004et9

4ETA | pdb_00004eta

4ETB | pdb_00004etb

4ETC | pdb_00004etc

4ETD | pdb_00004etd

4ETE | pdb_00004ete

4HWY | pdb_00004hwy

4N4Z | pdb_00004n4z

4O34 | pdb_00004o34

4PBU | pdb_00004pbu

4RVY | pdb_00004rvy

5G0Z | pdb_00005g0z

5G3X | pdb_00005g3x

6RFU | pdb_00006rfu