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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Schulz, E.C."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Homo sapiens (8)
	Eptatretus burgeri (7)
	Bos taurus (3)
	Escherichia coli (3)
	Murine norovirus (1)
	Murine norovirus 1 (1)
	Mus musculus (1)

Taxonomy

	Eukaryota (15)
	Bacteria (3)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

	Protein (19)
	RNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (5)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (10)
	2010 - 2014 (6)
	2015 - 2019 (1)

Enzyme Classification Name

Hydrolases (4)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (16)
	Dihedral (2)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	All alpha proteins (3)
	All beta proteins (3)
	Small proteins (3)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 19 of 19 Structures

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1XPO \| pdb_00001xpo	Download File View File

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin

Skordalakes, E., Brogan, A.P., Park, B.S., Kohn, H., Berger, J.M.

(2005) Structure 13: 99-109

Released	2005-02-08
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Escherichia coli
Macromolecule	Rho transcription termination factor (protein) 5'-R(CPUPCPUPCPUPCPU)-3' (nucleic acid)
Unique Ligands	AGS, BCM, MG

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1XPR \| pdb_00001xpr	Download File View File

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (FB)

Skordalakes, E., Brogan, A.P., Park, B.S., Kohn, H., Berger, J.M.

(2005) Structure 13: 99-109

Released	2004-11-02
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Escherichia coli
Macromolecule	Rho transcription termination factor (protein) 5'-R(CPUPCPUPCPUPCPU)-3' (nucleic acid)
Unique Ligands	AGS, FB, MG

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1XPU \| pdb_00001xpu	Download File View File

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB)

Skordalakes, E., Brogan, A.P., Park, B.S., Kohn, H., Berger, J.M.

(2005) Structure 13: 99-109

Released	2004-11-02
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli
Macromolecule	Rho transcription termination factor (protein) 5'-R(CPUPCPUPCPUPCPU)-3' (nucleic acid)
Unique Ligands	AGS, FPD, MG

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2O6Q \| pdb_00002o6q	Download File View File

Structural diversity of the hagfish Variable Lymphocyte Receptors A29

Lee, J.O., Kim, H.M., Oh, S.C.

(2007) J Biological Chem 282: 6726-6732

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Eptatretus burgeri
Macromolecule	Variable lymphocyte receptor A (protein)

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2O6R \| pdb_00002o6r	Download File View File

Structural diversity of the hagfish Variable Lymphocyte Receptors B61

Lee, J.O., Kim, H.M., Oh, S.C.

(2007) J Biological Chem 282: 6726-6732

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Eptatretus burgeri
Macromolecule	Variable lymphocyte receptor B (protein)

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2O6S \| pdb_00002o6s	Download File View File

Structural diversity of the hagfish Variable Lymphocyte Receptors B59

Lee, J.O., Kim, H.M., Oh, S.C.

(2007) J Biological Chem 282: 6726-6732

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Eptatretus burgeri
Macromolecule	Variable lymphocyte receptor B (protein)

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2Z62 \| pdb_00002z62	Download File View File

Crystal structure of the TV3 hybrid of human TLR4 and hagfish VLRB.61

Lee, J.-O., Kim, H.M., Park, B.S.

(2007) Cell 130: 906-917

Released	2007-09-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Eptatretus burgeri Homo sapiens
Macromolecule	Toll-like receptor 4, Variable lymphocyte receptor B (protein)
Unique branched monosaccharides	BMA, FUL, NAG

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2Z63 \| pdb_00002z63	Download File View File

Crystal structure of the TV8 hybrid of human TLR4 and hagfish VLRB.61

Kim, H.M., Park, B.S., Lee, J.-O.

(2007) Cell 130: 906-917

Released	2007-09-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Eptatretus burgeri Homo sapiens
Macromolecule	Toll-like receptor 4, Variable lymphocyte receptor B (protein)
Unique branched monosaccharides	FUL, NAG

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2Z64 \| pdb_00002z64	Download File View File

Crystal structure of mouse TLR4 and mouse MD-2 complex

Lee, J.-O., Kim, H.M., Park, B.S.

(2007) Cell 130: 906-917

Released	2007-09-18
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Mus musculus
Macromolecule	Lymphocyte antigen 96 (protein) Toll-like receptor 4 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUL, NAG

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2Z65 \| pdb_00002z65	Download File View File

Crystal structure of the human TLR4 TV3 hybrid-MD-2-Eritoran complex

Lee, J.-O., Kim, H.M., Park, B.S.

(2007) Cell 130: 906-917

Released	2007-09-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Eptatretus burgeri Homo sapiens
Macromolecule	Lymphocyte antigen 96 (protein) Toll-like receptor 4, Variable lymphocyte receptor B (protein)
Unique Ligands	E55, NAG
Unique branched monosaccharides	BMA, NAG

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2Z66 \| pdb_00002z66	Download File View File

Crystal structure of the VT3 hybrid of human TLR4 and hagfish VLRB.61

Lee, J.-O., Kim, H.M., Park, B.S.

(2007) Cell 130: 906-917

Released	2007-09-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Eptatretus burgeri Homo sapiens
Macromolecule	Variable lymphocyte receptor B, Toll-like receptor 4 (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BMA, FUL, NAG

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3FXI \| pdb_00003fxi	Download File View File

Crystal structure of the human TLR4-human MD-2-E.coli LPS Ra complex

Park, B.S., Song, D.H., Kim, H.M., Lee, J.-O.

(2009) Nature 458: 1191-1195

Released	2009-03-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Lymphocyte antigen 96 (protein) Toll-like receptor 4 (protein)
Unique Ligands	DAO, FTT, MG, MYR, NAG, PO4
Unique branched monosaccharides	GCS, GMH, KDO, NAG, PA1

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3LDI \| pdb_00003ldi	Download File View File

Crystal structure of aprotinin in complex with sucrose octasulfate: unusual interactions and implication for heparin binding

Yang, I.S., Kim, T.G., Park, B.S., Kim, K.H.

(2010) Biochem Biophys Res Commun 397: 429-435

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	Pancreatic trypsin inhibitor (protein)
Unique Ligands	GOL, HG, SO4

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3LDJ \| pdb_00003ldj	Download File View File

Crystal structure of aprotinin in complex with sucrose octasulfate: unusual interactions and implication for heparin binding

Yang, I.S., Kim, T.G., Park, B.S., Kim, K.H.

(2010) Biochem Biophys Res Commun

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	Pancreatic trypsin inhibitor (protein)
Unique Ligands	ACT
Unique branched monosaccharides	GU4, YYJ

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3LDM \| pdb_00003ldm	Download File View File

Crystal structure of aprotinin in complex with sucrose octasulfate: unusual interactions and implication for heparin binding

Yang, I.S., Kim, T.G., Park, B.S., Kim, K.H.

(2010) Biochem Biophys Res Commun

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Pancreatic trypsin inhibitor (protein)

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3QD6 \| pdb_00003qd6	Download File View File

Crystal structure of the CD40 and CD154 (CD40L) complex

Lee, J.-O., Kim, Y.J., Song, D.H., Kim, H.M., Park, B.S.

(2011) J Biological Chem 286: 11226-11235

Released	2011-02-02
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	CD40 ligand (protein) Tumor necrosis factor receptor superfamily member 5 (protein)
Unique Ligands	NAG

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4RCA \| pdb_00004rca	Download File View File

Crystal structure of human PTPdelta and human Slitrk1 complex

Kim, H.M., Park, B.S., Kim, D., Lee, S.G.

(2014) Nat Commun 5: 5423-5423

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.9908 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase delta (protein) SLIT and NTRK-like protein 1 (protein)
Unique Ligands	NAG, SO4

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4RCW \| pdb_00004rcw	Download File View File

Crystal structure of human Slitrk1

Kim, H.M., Park, B.S., Kim, D., Lee, S.G.

(2014) Nat Commun 5: 5423-5423

Released	2014-11-19
Method	X-RAY DIFFRACTION 3.1925 Å
Organisms	Homo sapiens
Macromolecule	SLIT and NTRK-like protein 1 (protein)

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5Y3D \| pdb_00005y3d	Download File View File

Structural insight into the interaction between RNA polymerase and VPg for norovirus replication

Kim, K.H., Lee, J.-H., Seok, J.H.

(2018) Front Microbiol 9: 1466-1466

Released	2018-07-18
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Murine norovirus Murine norovirus 1
Macromolecule	RNA-dependent RNA polymerase (protein) viral protein genome-linked (VPg) (protein)

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1XPO | pdb_00001xpo

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin

1XPR | pdb_00001xpr

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (FB)

1XPU | pdb_00001xpu

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB)

2O6Q | pdb_00002o6q

Structural diversity of the hagfish Variable Lymphocyte Receptors A29

2O6R | pdb_00002o6r

Structural diversity of the hagfish Variable Lymphocyte Receptors B61

2O6S | pdb_00002o6s

Structural diversity of the hagfish Variable Lymphocyte Receptors B59

2Z62 | pdb_00002z62

Crystal structure of the TV3 hybrid of human TLR4 and hagfish VLRB.61

2Z63 | pdb_00002z63

Crystal structure of the TV8 hybrid of human TLR4 and hagfish VLRB.61

2Z64 | pdb_00002z64

Crystal structure of mouse TLR4 and mouse MD-2 complex

2Z65 | pdb_00002z65

Crystal structure of the human TLR4 TV3 hybrid-MD-2-Eritoran complex

2Z66 | pdb_00002z66

Crystal structure of the VT3 hybrid of human TLR4 and hagfish VLRB.61

3FXI | pdb_00003fxi

Crystal structure of the human TLR4-human MD-2-E.coli LPS Ra complex

3LDI | pdb_00003ldi

Crystal structure of aprotinin in complex with sucrose octasulfate: unusual interactions and implication for heparin binding

3LDJ | pdb_00003ldj

Crystal structure of aprotinin in complex with sucrose octasulfate: unusual interactions and implication for heparin binding

3LDM | pdb_00003ldm

Crystal structure of aprotinin in complex with sucrose octasulfate: unusual interactions and implication for heparin binding

3QD6 | pdb_00003qd6

Crystal structure of the CD40 and CD154 (CD40L) complex

4RCA | pdb_00004rca

Crystal structure of human PTPdelta and human Slitrk1 complex

4RCW | pdb_00004rcw

Crystal structure of human Slitrk1

5Y3D | pdb_00005y3d

Structural insight into the interaction between RNA polymerase and VPg for norovirus replication

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1XPO | pdb_00001xpo

1XPR | pdb_00001xpr

1XPU | pdb_00001xpu

2O6Q | pdb_00002o6q

2O6R | pdb_00002o6r

2O6S | pdb_00002o6s

2Z62 | pdb_00002z62

2Z63 | pdb_00002z63

2Z64 | pdb_00002z64

2Z65 | pdb_00002z65

2Z66 | pdb_00002z66

3FXI | pdb_00003fxi

3LDI | pdb_00003ldi

3LDJ | pdb_00003ldj

3LDM | pdb_00003ldm

3QD6 | pdb_00003qd6

4RCA | pdb_00004rca

4RCW | pdb_00004rcw

5Y3D | pdb_00005y3d