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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Schmid, M.F."

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Search Summary

This query matches 59 Structures.

Refinements

Structure Determination Methodology

experimental (59)

Scientific Name of Source Organism

	Methanococcus maripaludis (9)
	Bos taurus (7)
	Helicobacter pylori (6)
	Homo sapiens (6)
	Brome mosaic virus (3)
	Escherichia coli (3)
	Lederbergvirus P22 (3)
	Mus musculus (3)
	Pseudomonas aeruginosa (3)
	Toxoplasma gondii ME49 (3)

More...

Taxonomy

	Eukaryota (20)
	Bacteria (19)
	Archaea (9)
	Riboviria (7)
	Duplodnaviria (4)

Experimental Method

	ELECTRON MICROSCOPY (52)
	X-RAY DIFFRACTION (5)
	SOLUTION NMR (2)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (55)
	RNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (1)
	2.5 - 3.0 (4)
	3.0 - 3.5 (10)
	3.5 - 4.0 (11)
	4.0 - 4.5 (7)
	> 4.5 (21)

Release Date

	1975 - 1979 (1)
	1995 - 1999 (2)
	2005 - 2009 (3)
	2010 - 2014 (12)
	2015 - 2019 (18)
	2020 - 2024 (23)

Enzyme Classification Name

	Hydrolases (15)
	Oxidoreductases (5)
	Transferases (2)
	Translocases (1)

Membrane Protein Annotation

	OPM (9)
	PDBTM (6)
	mpstruc (9)
	MemProtMD (2)

Symmetry Type

	Asymmetric (22)
	Cyclic (15)
	Dihedral (8)
	Icosahedral (7)
	Octahedral (3)

SCOP Classification

	All alpha proteins (2)
	Alpha and beta proteins (a/b) (2)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 59 Structures

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1CPB \| pdb_00001cpb	Download File View File

STRUCTURE OF CARBOXYPEPTIDASE B AT 2.8 ANGSTROMS RESOLUTION

Schmid, M.F., Herriott, J.R.

(1976) J Mol Biology 103: 175-190

Released	1977-11-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	CARBOXYPEPTIDASE B (protein)

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1EEA \| pdb_00001eea	Download File View File

Acetylcholinesterase

Raves, M.L., Giles, K., Schrag, J.D., Schmid, M.F., Phillips Jr., G.N., Wah, C., Howard, A.J., Silman, I., Sussman, J.L.

(1998) Structure And Function Of Cholinesterases And Related Proteins

Released	1999-02-01
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Electrophorus electricus
Macromolecule	PROTEIN (ACETYLCHOLINESTERASE) (protein)

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2L1F \| pdb_00002l1f	Download File View File

Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography

Summers, M.F., Irobalieva, R.N., Tolbert, B., Smalls-Manty, A., Iyalla, K., Loeliger, K., D'Souza, V., Khant, H., Schmid, M., Garcia, E., Telesnitsky, A., Chiu, W., Miyazaki, Y.

(2010) J Mol Biology 404: 751-772

Released	2010-10-27
Method	SOLUTION NMR
Organisms	Moloney murine leukemia virus
Macromolecule	RNA (65-MER) (nucleic acid) RNA (66-MER) (nucleic acid)

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2XD8 \| pdb_00002xd8	Download File View File

Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7

Liu, X., Zhang, Q., Murata, K., Baker, M.L., Sullivan, M.B., Fu, C., Dougherty, M., Schmid, M.F., Osburne, M.S., Chisholm, S.W., Chiu, W.

(2010) Nat Struct Mol Biol 17: 830

Released	2010-06-16
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Tiamatvirus PSSP7
Macromolecule	T7-LIKE CAPSID PROTEIN (protein)

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2XYY \| pdb_00002xyy	Download File View File

De Novo model of Bacteriophage P22 procapsid coat protein

Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W.

(2011) Proc Natl Acad Sci U S A 108: 1355

Released	2011-02-02
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Lederbergvirus P22
Macromolecule	COAT PROTEIN (protein)

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2XYZ \| pdb_00002xyz	Download File View File

De Novo model of Bacteriophage P22 virion coat protein

Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W.

(2011) Proc Natl Acad Sci U S A 108: 1355

Released	2011-02-02
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Lederbergvirus P22
Macromolecule	COAT PROTEIN (protein)

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3B5U \| pdb_00003b5u	Download File View File

Actin filament model from extended form of acromsomal bundle in the Limulus sperm

Cong, Y., Topf, M., Sali, A., Matsudaira, P., Dougherty, M., Chiu, W., Schmid, M.F.

(2008) J Mol Biology 375: 331-336

Released	2008-04-15
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein)

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3B63 \| pdb_00003b63	Download File View File

Actin filament model in the extended form of acromsomal bundle in the Limulus sperm

Cong, Y., Topf, M., Sali, A., Matsudaira, P., Dougherty, M., Chiu, W., Schmid, M.F.

(2008) J Mol Biology 375: 331-336

Released	2008-11-18
Method	ELECTRON MICROSCOPY 9.5 Å
Organisms	Limulus polyphemus
Macromolecule	Unique protein chains: 7

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3EOJ \| pdb_00003eoj	Download File View File

Fmo protein from Prosthecochloris Aestuarii 2K AT 1.3A Resolution

Tronrud, D.E., Wen, J., Gay, L., Blankenship, R.E.

(2009) Photosynth Res 100: 79-87

Released	2009-05-12
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Prosthecochloris aestuarii
Macromolecule	Bacteriochlorophyll a protein (protein)
Unique Ligands	BCL, EDO, NA, NH4

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3J32 \| pdb_00003j32	Download File View File

An asymmetric unit map from electron cryo-microscopy of Haliotis diversicolor molluscan hemocyanin isoform 1 (HdH1)

Zhang, Q., Dai, X., Cong, Y., Zhang, J., Chen, D.-H., Dougherty, M., Wang, J., Ludtke, S., Schmid, M.F., Chiu, W.

(2013) Structure 21: 604-613

Released	2013-04-17
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Haliotis diversicolor
Macromolecule	Hemocyanin isoform 1 (protein)

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3J7L \| pdb_00003j7l	Download File View File

Full virus map of brome mosaic virus

Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.

(2014) Nat Commun 5: 4808-4808

Released	2014-09-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Brome mosaic virus
Macromolecule	Capsid protein (protein)

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3J7M \| pdb_00003j7m	Download File View File

Virus model of brome mosaic virus (first half data set)

Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.

(2014) Nat Commun 5: 4808-4808

Released	2014-09-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Brome mosaic virus
Macromolecule	Capsid protein (protein)

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3J7N \| pdb_00003j7n	Download File View File

Virus model of brome mosaic virus (second half data set)

Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.

(2014) Nat Commun 5: 4808-4808

Released	2014-09-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Brome mosaic virus
Macromolecule	Capsid protein (protein)

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3JAB \| pdb_00003jab	Download File View File

Domain organization and conformational plasticity of the G protein effector, PDE6

Zhang, Z., He, F., Constantine, R., Baker, M.L., Baehr, W., Schmid, M.F., Wensel, T.G., Agosto, M.A.

(2015) J Biological Chem 290: 12833-12843

Released	2015-06-10
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Bos taurus Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	IBM

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3JBQ \| pdb_00003jbq	Download File View File

Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6

Zhang, Z., He, F., Constantine, R., Baker, M.L., Baehr, W., Schmid, M.F., Wensel, T.G., Agosto, M.A.

(2015) J Biological Chem 290: 12833-12843

Released	2015-09-30
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Bos taurus Mus musculus
Macromolecule	Unique protein chains: 6

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4A0O \| pdb_00004a0o	Download File View File

Symmetry-free cryo-EM map of TRiC in the nucleotide-free (apo) state

Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.

(2012) EMBO J 31: 720

Released	2012-02-15
Method	ELECTRON MICROSCOPY 10.5 Å
Organisms	Bos taurus
Macromolecule	T-COMPLEX PROTEIN 1 SUBUNIT BETA (protein)

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4A0V \| pdb_00004a0v	Download File View File

model refined against the Symmetry-free cryo-EM map of TRiC-AMP-PNP

Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.

(2012) EMBO J 31: 720

Released	2012-02-15
Method	ELECTRON MICROSCOPY 10.7 Å
Organisms	Bos taurus
Macromolecule	T-COMPLEX PROTEIN 1 SUBUNIT BETA (protein)

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4A0W \| pdb_00004a0w	Download File View File

model built against symmetry-free cryo-EM map of TRiC-ADP-AlFx

Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.

(2012) EMBO J 31: 720

Released	2012-02-15
Method	ELECTRON MICROSCOPY 13.9 Å
Organisms	Bos taurus
Macromolecule	T-COMPLEX PROTEIN 1 SUBUNIT BETA (protein)

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4A13 \| pdb_00004a13	Download File View File

model refined against symmetry-free cryo-EM map of TRiC-ADP

Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.

(2012) EMBO J 31: 720

Released	2012-02-15
Method	ELECTRON MICROSCOPY 11.3 Å
Organisms	Bos taurus
Macromolecule	T-COMPLEX PROTEIN 1 SUBUNIT BETA (protein)

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4BCL \| pdb_00004bcl	Download File View File

FMO protein from Prosthecochloris aestuarii 2K at Room Temperature

Tronrud, D.E., Matthews, B.W.

(1993) Photosynthetic Reaction Center 1: 13

Released	1998-09-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Prosthecochloris aestuarii
Macromolecule	BACTERIOCHLOROPHYLL A PROTEIN (protein)
Unique Ligands	BCL

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5NC5 \| pdb_00005nc5	Download File View File

Crystal structure of AcrBZ in complex with antibiotic puromycin

Du, D., Luisi, B.

(2017) Elife 6:

Released	2017-04-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	DARPin (protein) Multidrug efflux pump accessory protein AcrZ (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, D12, DD9, HEX, LMT, PUY

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5NG5 \| pdb_00005ng5	Download File View File

multi-drug efflux; membrane transport; RND superfamily; Drug resistance

Wang, Z., Fan, G., Hryc, C.F., Blaza, J.N., Serysheva, I.I., Schmid, M.F., Chiu, W., Luisi, B.F., Du, D.

(2017) Elife 6:

Released	2017-04-19
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	Escherichia coli
Macromolecule	Multidrug efflux pump accessory protein AcrZ (protein) Multidrug efflux pump subunit AcrA (protein) Multidrug efflux pump subunit AcrB (protein) Outer membrane protein TolC (protein)
Unique Ligands	5QF

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5O66 \| pdb_00005o66	Download File View File

Asymmetric AcrABZ-TolC

Du, D., Luisi, B.F.

(2017) Elife 6:

Released	2017-06-14
Method	ELECTRON MICROSCOPY 5.9 Å
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Multidrug efflux pump accessory protein AcrZ (protein) Multidrug efflux pump subunit AcrA (protein) Multidrug efflux pump subunit AcrB (protein) Outer membrane protein TolC (protein)

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5UU5 \| pdb_00005uu5	Download File View File

Bacteriophage P22 mature virion capsid protein

Hryc, C.F., Chen, D.-H., Afonine, P.V., Jakana, J., Wang, Z., Haase-Pettingell, C., Jiang, W., Adams, P.D., King, J.A., Schmid, M.F., Chiu, W.

(2017) Proc Natl Acad Sci U S A 114: 3103-3108

Released	2017-03-15
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Lederbergvirus P22
Macromolecule	Major capsid protein (protein)

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5V5S \| pdb_00005v5s	Download File View File

multi-drug efflux; membrane transport; RND superfamily; Drug resistance

wang, Z., fan, G., Hryc, C.F., Blaza, J.N., Serysheva, I.I., Schmid, M.F., Chiu, W., Luisi, B.F., Du, D.

(2017) Elife 6:

Released	2017-04-19
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	Escherichia coli
Macromolecule	Multidrug efflux pump subunit AcrA (protein) Multidrug efflux pump subunit AcrB (protein) Outer membrane protein TolC (protein)

1 to 25 of 59 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CPB | pdb_00001cpb

1EEA | pdb_00001eea

2L1F | pdb_00002l1f

2XD8 | pdb_00002xd8

2XYY | pdb_00002xyy

2XYZ | pdb_00002xyz

3B5U | pdb_00003b5u

3B63 | pdb_00003b63

3EOJ | pdb_00003eoj

3J32 | pdb_00003j32

3J7L | pdb_00003j7l

3J7M | pdb_00003j7m

3J7N | pdb_00003j7n

3JAB | pdb_00003jab

3JBQ | pdb_00003jbq

4A0O | pdb_00004a0o

4A0V | pdb_00004a0v

4A0W | pdb_00004a0w

4A13 | pdb_00004a13

4BCL | pdb_00004bcl

5NC5 | pdb_00005nc5

5NG5 | pdb_00005ng5

5O66 | pdb_00005o66

5UU5 | pdb_00005uu5

5V5S | pdb_00005v5s