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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Odokonyero, D."

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Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Homo sapiens (18)
	Clostridium beijerinckii (16)
	Escherichia coli (5)
	Staphylococcus aureus (4)
	Nicotiana tabacum (3)
	Carica papaya (2)
	Penicillium janthinellum (2)
	Cytomegalovirus (1)
	Human alphaherpesvirus 2 (1)
	Human alphaherpesvirus 3 (1)

More...

Taxonomy

	Bacteria (27)
	Eukaryota (26)
	Duplodnaviria (3)
	Eukaryota (eukaryotes) (1)

Experimental Method

X-RAY DIFFRACTION (56)

Polymer Entity Type

Protein (56)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (2)
	1.5 - 2.0 (23)
	2.0 - 2.5 (14)
	2.5 - 3.0 (13)
	3.0 - 3.5 (3)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (37)
	2000 - 2004 (12)
	2005 - 2009 (3)

Enzyme Classification Name

	Hydrolases (25)
	Transferases (5)
	Lyases (3)
	Ligases (4)

Symmetry Type

	Asymmetric (41)
	Cyclic (12)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (24)
	Alpha and beta proteins (a/b) (30)
	All beta proteins (5)
	All alpha proteins (3)
	Small proteins (1)

AllSelected

1 to 25 of 56 Structures

Page 1 of 3

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1AT3 \| pdb_00001at3	Download File View File

HERPES SIMPLEX VIRUS TYPE II PROTEASE

Hoog, S., Smith, W.W., Qiu, X., Abdel-Meguid, S.S.

(1997) Biochemistry 36: 14023-14029

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human alphaherpesvirus 2
Macromolecule	HERPES SIMPLEX VIRUS TYPE II PROTEASE (protein)
Unique Ligands	DFP

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1ATK \| pdb_00001atk	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH THE COVALENT INHIBITOR E-64

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) Nat Struct Biol 4: 109-111

Released	1998-02-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	E64

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1AU0 \| pdb_00001au0	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT SYMMETRIC DIACYLAMINOMETHYL KETONE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) J Am Chem Soc 119: 11351-11352

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	SDK

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1AU2 \| pdb_00001au2	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT PROPANONE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) J Am Chem Soc 119: 11351-11352

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	POS

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1AU3 \| pdb_00001au3	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT PYRROLIDINONE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1998) J Med Chem 41: 3563-3567

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	PCM

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1AU4 \| pdb_00001au4	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT PYRROLIDINONE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1998) J Med Chem 41: 3563-3567

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	INP

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1AYU \| pdb_00001ayu	Download File View File

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT SYMMETRIC BISCARBOHYDRAZIDE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) Proc Natl Acad Sci U S A 94: 14249-14254

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	INA

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1AYV \| pdb_00001ayv	Download File View File

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT THIAZOLHYDRAZIDE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) Proc Natl Acad Sci U S A 94: 14249-14254

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	IN6

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1AYW \| pdb_00001ayw	Download File View File

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT BENZYLOXYBENZOYLCARBOHYDRAZIDE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) Proc Natl Acad Sci U S A 94: 14249-14254

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	IN3

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1BGO \| pdb_00001bgo	Download File View File

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT PEPTIDOMIMETIC INHIBITOR

Desjarlais, R.L., Yamashita, D.S., Oh, H.-J., Bondinell, W.E., Uzinskas, I.N., Erhard, K.F., Allen, A.C., Haltiwanger, R.C., Zhao, B., Smith, W.W., Abdel-Meguid, S.S., D'Alessio, K., Janson, C.A., Mcqueney, M.S., Tomaszek, T.A., Levy, M.A., Veber, D.F.

(1998) J Am Chem Soc 120: 9114

Released	1999-06-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	I10

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1BP4 \| pdb_00001bp4	Download File View File

USE OF PAPAIN AS A MODEL FOR THE STRUCTURE-BASED DESIGN OF CATHEPSIN K INHIBITORS. CRYSTAL STRUCTURES OF TWO PAPAIN INHIBITOR COMPLEXES DEMONSTRATE BINDING TO S'-SUBSITES.

Lalonde, J.M., Zhao, B., Smith, W.W., Janson, C.A., Desjarlais, R.L., Tomaszek, T.A., Carr, T.J., Thompson, S.K., Yamashita, D.S., Veber, D.F., Abdel-Mequid, S.S.

(1998) J Med Chem 41: 4567-4576

Released	1999-08-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Carica papaya
Macromolecule	PAPAIN (protein)
Unique Ligands	ALD

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1BQI \| pdb_00001bqi	Download File View File

USE OF PAPAIN AS A MODEL FOR THE STRUCTURE-BASED DESIGN OF CATHEPSIN K INHIBITORS. CRYSTAL STRUCTURES OF TWO PAPAIN INHIBITOR COMPLEXES DEMONSTRATE BINDING TO S'-SUBSITES.

Lalonde, J.M., Zhao, B., Smith, W.W., Janson, C.A., Desjarlais, R.L., Tomaszek, T.A., Carr, T.J., Thompson, S.K., Yamashita, D.S., Veber, D.F., Abdel-Mequid, S.S.

(1998) J Med Chem 41: 4567-4576

Released	1999-08-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Carica papaya
Macromolecule	PAPAIN (protein)
Unique Ligands	SBA

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1BXO \| pdb_00001bxo	Download File View File

ACID PROTEINASE (PENICILLOPEPSIN) (E.C.3.4.23.20) COMPLEX WITH PHOSPHONATE INHIBITOR: METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUT YL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL) PHENYLPROPANOATE

Khan, A.R., Parrish, J.C., Fraser, M.E., Smith, W.W., Bartlett, P.A., James, M.N.G.

(1998) Biochemistry 37: 16839-16845

Released	1998-10-14
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Penicillium janthinellum
Macromolecule	PROTEIN (PENICILLOPEPSIN) (protein)
Unique Ligands	GOL, MAN, PP7, SO4

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1BXQ \| pdb_00001bxq	Download File View File

ACID PROTEINASE (PENICILLOPEPSIN) COMPLEX WITH PHOSPHONATE INHIBITOR.

Parrish, J.C., Khan, A.R., Fraser, M.E., Smith, W.W., Bartlett, P.A., James, M.N.G.

(1998) Biochemistry 37: 16839-16845

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Penicillium janthinellum
Macromolecule	PROTEIN (PENICILLOPEPSIN) (protein)
Unique Ligands	ACT, GOL, MAN, PP8, SO4

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1BY8 \| pdb_00001by8	Download File View File

THE CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN K

Lalonde, J.M., Zhao, B., Smith, W.W., Janson, C.A., Desjarlais, R.L., Tomaszek, T.A., Carr, T.J., Thompson, S.K., Yamashita, D.S., Veber, D.F., Abdel-Mequid, S.S.

(1999) Biochemistry 38: 862-869

Released	1999-10-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (PROCATHEPSIN K) (protein)

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1CZN \| pdb_00001czn	Download File View File

REFINED STRUCTURES OF OXIDIZED FLAVODOXIN FROM ANACYSTIS NIDULANS

Smith, W.W., Pattridge, K.A., Luschinsky, C.L., Ludwig, M.L.

(1999) J Mol Biology 294: 711-724

Released	1999-12-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FLA \| pdb_00001fla	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57D REDUCED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FLD \| pdb_00001fld	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57T OXIDIZED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FLN \| pdb_00001fln	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: D58P REDUCED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FVX \| pdb_00001fvx	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57N OXIDIZED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1HN9 \| pdb_00001hn9	Download File View File

CRYSTAL STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE III

Qiu, X., Janson, C.A., Konstantinidis, A.K., Nwagwu, S., Silverman, C., Smith, W.W., Khandekar, S.K., Lonsdale, J., Abdel-Meguid, S.S.

(1999) J Biological Chem 274: 36465-36471

Released	2000-12-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	BETA-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III (protein)
Unique Ligands	PO4

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1HND \| pdb_00001hnd	Download File View File

CRYSTAL STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE III-COA COMPLEX

Qiu, X., Janson, C.A., Smith, W.W., Head, M., Lonsdale, J., Konstantinidis, A.K.

(2001) J Mol Biology 307: 341-356

Released	2000-12-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	BETA-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III (protein)
Unique Ligands	COA

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1HNH \| pdb_00001hnh	Download File View File

CRYSTAL STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE III + DEGRADED FORM OF ACETYL-COA

Qiu, X., Janson, C.A., Smith, W.W., Head, M., Lonsdale, J., Konstantinidis, A.K.

(2001) J Mol Biology 307: 341-356

Released	2000-12-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	BETA-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III (protein)
Unique Ligands	COA

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1HNJ \| pdb_00001hnj	Download File View File

CRYSTAL STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE III + MALONYL-COA

Qiu, X., Janson, C.A., Smith, W.W., Head, M., Lonsdale, J., Konstantinidis, A.K.

(2001) J Mol Biology 307: 341-356

Released	2000-12-27
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Escherichia coli
Macromolecule	BETA-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III (protein)
Unique Ligands	MLC, PO4