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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Newcomer, M.E."

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Search Summary

This query matches 190 Structures.

Refinements

Structure Determination Methodology

experimental (190)

Scientific Name of Source Organism

	Homo sapiens (96)
	Vibrio harveyi (12)
	Escherichia coli (11)
	Mus musculus (8)
	Pseudomonas aeruginosa (8)
	Severe acute respiratory syndrome coronavirus 2 (7)
	Pseudomonas aeruginosa PAO1 (5)
	synthetic construct (5)
	Escherichia coli K-12 (4)
	Saccharomyces cerevisiae (4)

More...

Taxonomy

	Eukaryota (127)
	Bacteria (67)
	Riboviria (7)
	other sequences (5)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (117)
	ELECTRON MICROSCOPY (60)
	SOLUTION NMR (13)

Polymer Entity Type

	Protein (188)
	DNA (13)
	RNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (45)
	2.0 - 2.5 (35)
	2.5 - 3.0 (40)
	3.0 - 3.5 (34)
	3.5 - 4.0 (12)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (12)
	2010 - 2014 (14)
	2015 - 2019 (45)
	2020 - 2024 (116)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (65)
	Transferases (35)
	Oxidoreductases (5)
	Isomerases (5)
	Ligases (4)
	Lyases (4)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (19)
	mpstruc (14)
	OPM (11)
	MemProtMD (7)

Symmetry Type

	Asymmetric (122)
	Cyclic (45)
	Dihedral (21)
	Helical (4)

SCOP Classification

	All alpha proteins (16)
	Alpha and beta proteins (a+b) (8)
	Alpha and beta proteins (a/b) (4)
	All beta proteins (5)
	Artifacts (4)
	Small proteins (2)

AllSelected

1 to 25 of 190 Structures

Page 1 of 8

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2KLZ \| pdb_00002klz	Download File View File

Solution Structure of the Tandem UIM Domain of Ataxin-3 Complexed with Ubiquitin

Zhou, C., Song, A., Lin, D., Hu, H.

To be published

Released	2010-07-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ataxin-3 (protein)

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2KO2 \| pdb_00002ko2	Download File View File

NOGO66

Cocco, M.J., Schulz, J., Vasudevan, S.V.

(2010) Proc Natl Acad Sci U S A 107: 6847-6851

Released	2010-04-21
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Reticulon-4 (protein)

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2KSN \| pdb_00002ksn	Download File View File

Solution Structure of the N-terminal Domain of DC-UbP/UBTD2

Song, A., Zhou, C., Guan, X., Sze, K., Hu, H.

(2010) Protein Sci 19: 1104-1109

Released	2010-05-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin domain-containing protein 2 (protein)

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2L80 \| pdb_00002l80	Download File View File

Solution Structure of the Zinc Finger Domain of USP13

Zhang, Y., Zhou, C., Zhou, Z., Song, A., Hu, H.

To be published

Released	2011-12-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 13 (protein)
Unique Ligands	ZN

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2LBC \| pdb_00002lbc	Download File View File

solution structure of tandem UBA of USP13

Zhang, Y., Zhou, C., Zhou, Z., Song, A., Hu, H.

(2011) PLoS One 6: e29362-e29362

Released	2012-03-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 13 (protein)

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2LJ0 \| pdb_00002lj0	Download File View File

The third SH3 domain of R85FL

Jiang, Y., Hu, H.

To be published

Released	2012-09-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Sorbin and SH3 domain-containing protein 1 (protein)

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2LJ1 \| pdb_00002lj1	Download File View File

The third SH3 domain of R85FL with ataxin-7 PRR

Jiang, Y., Hu, H.

To be published

Released	2012-09-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Sorbin and SH3 domain-containing protein 1 (protein)

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2N9X \| pdb_00002n9x	Download File View File

LC3 FUNDC1 complex structure

Xia, B., Kuang, Y.

(2016) Autophagy 12: 2363-2373

Released	2016-12-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FUN14 domain-containing protein 1 (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)

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3CIV \| pdb_00003civ	Download File View File

Crystal structure of the endo-beta-1,4-mannanase from Alicyclobacillus acidocaldarius

Ma, Y., Zhang, Y., Xue, Y.

(2008) J Biological Chem 283: 31551-31558

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Alicyclobacillus acidocaldarius
Macromolecule	Endo-beta-1,4-mannanase (protein)

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3CRM \| pdb_00003crm	Download File View File

Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel

Huang, R.H., Xie, W., Zhou, C.

(2007) J Mol Biology 367: 872-881

Released	2008-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	tRNA delta(2)-isopentenylpyrophosphate transferase (protein)

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3CRQ \| pdb_00003crq	Download File View File

Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel

Huang, R.H., Xie, W., Zhou, C.

(2007) J Mol Biology 367: 872-881

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	tRNA delta(2)-isopentenylpyrophosphate transferase (protein)
Unique Ligands	DPO, MG

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3CRR \| pdb_00003crr	Download File View File

Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel

Huang, R.H., Xie, W., Zhou, C.

(2007) J Mol Biology 367: 872-881

Released	2008-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	tRNA delta(2)-isopentenylpyrophosphate transferase (protein)
Unique Ligands	CL, DPO, MG, TRS

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3EPH \| pdb_00003eph	Download File View File

Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism

Huang, R.H., Zhou, C.

(2008) Proc Natl Acad Sci U S A 105: 16142-16147

Released	2008-11-04
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	tRNA isopentenyltransferase (protein) tRNA (nucleic acid)
Unique Ligands	MG, PPV, ZN

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3EPJ \| pdb_00003epj	Download File View File

Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism

Huang, R.H., Zhou, C.

(2008) Proc Natl Acad Sci U S A 105: 16142-16147

Released	2008-11-04
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	tRNA isopentenyltransferase (protein) tRNA (nucleic acid)
Unique Ligands	MG, ZN

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3EPK \| pdb_00003epk	Download File View File

Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism

Huang, R.H., Zhou, C.

(2008) Proc Natl Acad Sci U S A 105: 16142-16147

Released	2008-11-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	tRNA isopentenyltransferase (protein) tRNA (nucleic acid)
Unique Ligands	DST, MG, PPV, ZN

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3EPL \| pdb_00003epl	Download File View File

Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism

Huang, R.H., Zhou, C.

(2008) Proc Natl Acad Sci U S A 105: 16142-16147

Released	2008-11-04
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	tRNA isopentenyltransferase (protein) tRNA (nucleic acid)
Unique Ligands	DMA, MG, ZN

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3JWG \| pdb_00003jwg	Download File View File

Crystal structure analysis of the methyltransferase domain of bacterial-CtHen1-C

Huang, R.H., Chan, C.M., Zhou, C., Brunzelle, J.S.

(2009) Proc Natl Acad Sci U S A 106: 17699-17704

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Methyltransferase type 12 (protein)
Unique Ligands	MG

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3JWH \| pdb_00003jwh	Download File View File

Crystal structure analysis of the methyltransferase domain of bacterial-AvHen1-C

Huang, R.H., Chan, C.M., Zhou, C., Brunzelle, J.S.

(2009) Proc Natl Acad Sci U S A 106: 17699-17704

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Trichormus variabilis ATCC 29413
Macromolecule	Hen1 (protein)
Unique Ligands	SAH

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3JWI \| pdb_00003jwi	Download File View File

Crystal structure analysis of the methyltransferase domain of bacterial-CtHen1-CN

Huang, R.H., Chan, C.M., Zhou, C., Brunzelle, J.S.

(2009) Proc Natl Acad Sci U S A 106: 17699-17704

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Methyltransferase type 12 (protein)

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3JWJ \| pdb_00003jwj	Download File View File

Crystal structure analysis of the methyltransferase domain of bacterial-AvHen1-CN

Huang, R.H., Chan, C.M., Zhou, C., Brunzelle, J.S.

(2009) Proc Natl Acad Sci U S A 106: 17699-17704

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Trichormus variabilis ATCC 29413
Macromolecule	Hen1 (protein)

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3VMV \| pdb_00003vmv	Download File View File

Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165

Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y.

(2012) Biochem Biophys Res Commun 420: 269-274

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Bacillus sp. N16-5
Macromolecule	Pectate lyase (protein)
Unique Ligands	SO4

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3VMW \| pdb_00003vmw	Download File View File

Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate

Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y.

(2012) Biochem Biophys Res Commun 420: 269-274

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus sp. N16-5
Macromolecule	Pectate lyase (protein)
Unique Ligands	SO4
Unique branched monosaccharides	ADA

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4EQC \| pdb_00004eqc	Download File View File

Crystal structure of PAK1 kinase domain in complex with FRAX597 inhibitor

Maksimoska, J., Marmorstein, R.

(2013) J Biological Chem 288: 29105-29114

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase PAK 1 (protein)
Unique Ligands	CL, XR1

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4IXL \| pdb_00004ixl	Download File View File

Crystal structure of endo-beta-1,4-xylanase from the alkaliphilic Bacillus sp. SN5

Bai, W.Q., Xue, Y.F., Huang, J.X., Zhou, C., Guo, R.T., Ma, Y.H.

To be published

Released	2014-02-12
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Bacillus sp. (in: firmicutes)
Macromolecule	xylanase (protein)
Unique Ligands	SO4

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4KR2 \| pdb_00004kr2	Download File View File

Glycyl-tRNA synthetase in complex with tRNA-Gly

Qin, X., Hao, Z., Tian, Q., Zhang, Z., Zhou, C., Xie, W.

(2014) J Biological Chem 289: 20359-20369

Released	2014-05-21
Method	X-RAY DIFFRACTION 3.292 Å
Organisms	Homo sapiens
Macromolecule	Glycine--tRNA ligase (protein) Gly-tRNA-CCC (nucleic acid)
Unique Ligands	AMP

1 to 25 of 190 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2KLZ | pdb_00002klz

2KO2 | pdb_00002ko2

2KSN | pdb_00002ksn

2L80 | pdb_00002l80

2LBC | pdb_00002lbc

2LJ0 | pdb_00002lj0

2LJ1 | pdb_00002lj1

2N9X | pdb_00002n9x

3CIV | pdb_00003civ

3CRM | pdb_00003crm

3CRQ | pdb_00003crq

3CRR | pdb_00003crr

3EPH | pdb_00003eph

3EPJ | pdb_00003epj

3EPK | pdb_00003epk

3EPL | pdb_00003epl

3JWG | pdb_00003jwg

3JWH | pdb_00003jwh

3JWI | pdb_00003jwi

3JWJ | pdb_00003jwj

3VMV | pdb_00003vmv

3VMW | pdb_00003vmw

4EQC | pdb_00004eqc

4IXL | pdb_00004ixl

4KR2 | pdb_00004kr2