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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hryc, C.F."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Escherichia coli (4)
	Brome mosaic virus (3)
	Lederbergvirus P22 (3)
	Escherichia coli K-12 (2)
	Escherichia coli O157:H7 (2)
	Orsay virus (2)
	Saccharomyces cerevisiae (2)
	Saccharomyces cerevisiae S288C (2)
	Venezuelan equine encephalitis virus (strain TC-83) (2)
	Salmonella phage epsilon15 (1)

Taxonomy

	Riboviria (7)
	Bacteria (5)
	Duplodnaviria (4)
	Eukaryota (4)

Experimental Method

	ELECTRON MICROSCOPY (16)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	2.5 - 3.0 (1)
	3.0 - 3.5 (5)
	3.5 - 4.0 (7)
	4.0 - 4.5 (1)
	> 4.5 (6)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (8)
	2020 - 2024 (2)

Enzyme Classification Name

	Translocases (2)
	Hydrolases (2)
	Isomerases (1)

Membrane Protein Annotation

	OPM (8)
	PDBTM (8)
	mpstruc (6)
	MemProtMD (4)

Symmetry Type

	Icosahedral (11)
	Asymmetric (4)
	Cyclic (4)
	Dihedral (1)

AllSelected

1 to 20 of 20 Structures

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2XYY \| pdb_00002xyy	Download File View File

De Novo model of Bacteriophage P22 procapsid coat protein

Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W.

(2011) Proc Natl Acad Sci U S A 108: 1355

Released	2011-02-02
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Lederbergvirus P22
Macromolecule	COAT PROTEIN (protein)

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2XYZ \| pdb_00002xyz	Download File View File

De Novo model of Bacteriophage P22 virion coat protein

Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W.

(2011) Proc Natl Acad Sci U S A 108: 1355

Released	2011-02-02
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Lederbergvirus P22
Macromolecule	COAT PROTEIN (protein)

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3J0C \| pdb_00003j0c	Download File View File

Models of E1, E2 and CP of Venezuelan Equine Encephalitis Virus TC-83 strain restrained by a near atomic resolution cryo-EM map

Zhang, R., Hryc, C.F., Cong, Y., Liu, X., Jakana, J., Gorchakov, R., Baker, M.L., Weaver, S.C., Chiu, W.

(2011) EMBO J 30: 3854-3863

Released	2011-08-24
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Venezuelan equine encephalitis virus (strain TC-83)
Macromolecule	Capsid protein (protein) E1 envelope glycoprotein (protein) E2 envelope glycoprotein (protein)

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3J0G \| pdb_00003j0g	Download File View File

Homology model of E3 protein of Venezuelan Equine Encephalitis Virus TC-83 strain fitted with a cryo-EM map

Zhang, R., Hryc, C.F., Chiu, W.

(2011) EMBO J 30: 3854-3863

Released	2011-08-24
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Venezuelan equine encephalitis virus (strain TC-83)
Macromolecule	E3 protein (protein)

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3J40 \| pdb_00003j40	Download File View File

Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling

Baker, M.L., Hryc, C.F., Zhang, Q., Wu, W., Jakana, J., Haase-Pettingell, C., Afonine, P.V., Adams, P.D., King, J.A., Jiang, W., Chiu, W.

(2013) Proc Natl Acad Sci U S A 110: 12301-12306

Released	2013-07-10
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Salmonella phage epsilon15
Macromolecule	gp10 (protein) gp7 (protein)

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3J7L \| pdb_00003j7l	Download File View File

Full virus map of brome mosaic virus

Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.

(2014) Nat Commun 5: 4808-4808

Released	2014-09-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Brome mosaic virus
Macromolecule	Capsid protein (protein)

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3J7M \| pdb_00003j7m	Download File View File

Virus model of brome mosaic virus (first half data set)

Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.

(2014) Nat Commun 5: 4808-4808

Released	2014-09-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Brome mosaic virus
Macromolecule	Capsid protein (protein)

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3J7N \| pdb_00003j7n	Download File View File

Virus model of brome mosaic virus (second half data set)

Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.

(2014) Nat Commun 5: 4808-4808

Released	2014-09-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Brome mosaic virus
Macromolecule	Capsid protein (protein)

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4NWV \| pdb_00004nwv	Download File View File

Crystal structure of Orsay virus-like particle

Tao, Y.J., Guo, Y.R.

(2014) Proc Natl Acad Sci U S A 111: 12781-12786

Released	2014-08-20
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Orsay virus
Macromolecule	Capsid protein (protein)
Unique Ligands	CA

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4NWW \| pdb_00004nww	Download File View File

Crystal structure of an N-terminally truncated capsid protein mutant of Orsay virus

Tao, Y.J., Guo, Y.R.

(2014) Proc Natl Acad Sci U S A 111: 12781-12786

Released	2014-08-20
Method	X-RAY DIFFRACTION 3.75 Å
Organisms	Orsay virus
Macromolecule	Capsid protein (protein)
Unique Ligands	CA

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5NC5 \| pdb_00005nc5	Download File View File

Crystal structure of AcrBZ in complex with antibiotic puromycin

Du, D., Luisi, B.

(2017) Elife 6:

Released	2017-04-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	DARPin (protein) Multidrug efflux pump accessory protein AcrZ (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, D12, DD9, HEX, LMT, PUY

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5NG5 \| pdb_00005ng5	Download File View File

multi-drug efflux; membrane transport; RND superfamily; Drug resistance

Wang, Z., Fan, G., Hryc, C.F., Blaza, J.N., Serysheva, I.I., Schmid, M.F., Chiu, W., Luisi, B.F., Du, D.

(2017) Elife 6:

Released	2017-04-19
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	Escherichia coli
Macromolecule	Multidrug efflux pump accessory protein AcrZ (protein) Multidrug efflux pump subunit AcrA (protein) Multidrug efflux pump subunit AcrB (protein) Outer membrane protein TolC (protein)
Unique Ligands	5QF

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5O66 \| pdb_00005o66	Download File View File

Asymmetric AcrABZ-TolC

Du, D., Luisi, B.F.

(2017) Elife 6:

Released	2017-06-14
Method	ELECTRON MICROSCOPY 5.9 Å
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Multidrug efflux pump accessory protein AcrZ (protein) Multidrug efflux pump subunit AcrA (protein) Multidrug efflux pump subunit AcrB (protein) Outer membrane protein TolC (protein)

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5UU5 \| pdb_00005uu5	Download File View File

Bacteriophage P22 mature virion capsid protein

Hryc, C.F., Chen, D.-H., Afonine, P.V., Jakana, J., Wang, Z., Haase-Pettingell, C., Jiang, W., Adams, P.D., King, J.A., Schmid, M.F., Chiu, W.

(2017) Proc Natl Acad Sci U S A 114: 3103-3108

Released	2017-03-15
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Lederbergvirus P22
Macromolecule	Major capsid protein (protein)

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5V5S \| pdb_00005v5s	Download File View File

multi-drug efflux; membrane transport; RND superfamily; Drug resistance

wang, Z., fan, G., Hryc, C.F., Blaza, J.N., Serysheva, I.I., Schmid, M.F., Chiu, W., Luisi, B.F., Du, D.

(2017) Elife 6:

Released	2017-04-19
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	Escherichia coli
Macromolecule	Multidrug efflux pump subunit AcrA (protein) Multidrug efflux pump subunit AcrB (protein) Outer membrane protein TolC (protein)

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5W0S \| pdb_00005w0s	Download File View File

GroEL using cryoEM

Roh, S.H., Chiu, W.

(2017) Proc Natl Acad Sci U S A 114: 8259-8264

Released	2017-08-09
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Escherichia coli
Macromolecule	60 kDa chaperonin (protein)

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6AMN \| pdb_00006amn	Download File View File

Crystal Structure of Hsp104 N Domain

Lee, S.

(2017) Sci Rep 7: 11184-11184

Released	2017-11-29
Method	X-RAY DIFFRACTION 2.816 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Heat shock protein 104 (protein)

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6C6L \| pdb_00006c6l	Download File View File

Yeast Vacuolar ATPase Vo in lipid nanodisc

Roh, S., Stam, N.J., Hryc, C., Couoh-Cardel, S., Pintilie, G., Chiu, W., Wilkens, S.

(2018) Mol Cell 69: 993-1004.e3

Released	2018-03-21
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 8

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8E7S \| pdb_00008e7s	Download File View File

III2IV2 respiratory supercomplex from Saccharomyces cerevisiae with 4 bound UQ6

Hryc, C.F., Mileykovskaya, E., Baker, M., Dowhan, W.

(2023) Nat Commun 14: 2783-2783

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 22
Unique Ligands	CDL, CN5, CU, CUA, FES, HEA, HEM, PCF, PEF, UQ6

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8EC0 \| pdb_00008ec0	Download File View File

III2IV respiratory supercomplex from Saccharomyces cerevisiae cardiolipin-lacking mutant

Hryc, C.F., Mileykovskaya, E., Baker, M., Dowhan, W.

(2023) Nat Commun 14: 2783-2783

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 21
Unique Ligands	CU, CUA, FES, HEA, HEM, PCF, PEF, PGT, UQ6

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2XYY | pdb_00002xyy

De Novo model of Bacteriophage P22 procapsid coat protein

2XYZ | pdb_00002xyz

De Novo model of Bacteriophage P22 virion coat protein

3J0C | pdb_00003j0c

Models of E1, E2 and CP of Venezuelan Equine Encephalitis Virus TC-83 strain restrained by a near atomic resolution cryo-EM map

3J0G | pdb_00003j0g

Homology model of E3 protein of Venezuelan Equine Encephalitis Virus TC-83 strain fitted with a cryo-EM map

3J40 | pdb_00003j40

Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling

3J7L | pdb_00003j7l

Full virus map of brome mosaic virus

3J7M | pdb_00003j7m

Virus model of brome mosaic virus (first half data set)

3J7N | pdb_00003j7n

Virus model of brome mosaic virus (second half data set)

4NWV | pdb_00004nwv

Crystal structure of Orsay virus-like particle

4NWW | pdb_00004nww

Crystal structure of an N-terminally truncated capsid protein mutant of Orsay virus

5NC5 | pdb_00005nc5

Crystal structure of AcrBZ in complex with antibiotic puromycin

5NG5 | pdb_00005ng5

multi-drug efflux; membrane transport; RND superfamily; Drug resistance

5O66 | pdb_00005o66

Asymmetric AcrABZ-TolC

5UU5 | pdb_00005uu5

Bacteriophage P22 mature virion capsid protein

5V5S | pdb_00005v5s

multi-drug efflux; membrane transport; RND superfamily; Drug resistance

5W0S | pdb_00005w0s

GroEL using cryoEM

6AMN | pdb_00006amn

Crystal Structure of Hsp104 N Domain

6C6L | pdb_00006c6l

Yeast Vacuolar ATPase Vo in lipid nanodisc

8E7S | pdb_00008e7s

III2IV2 respiratory supercomplex from Saccharomyces cerevisiae with 4 bound UQ6

8EC0 | pdb_00008ec0

III2IV respiratory supercomplex from Saccharomyces cerevisiae cardiolipin-lacking mutant

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

2XYY | pdb_00002xyy

2XYZ | pdb_00002xyz

3J0C | pdb_00003j0c

3J0G | pdb_00003j0g

3J40 | pdb_00003j40

3J7L | pdb_00003j7l

3J7M | pdb_00003j7m

3J7N | pdb_00003j7n

4NWV | pdb_00004nwv

4NWW | pdb_00004nww

5NC5 | pdb_00005nc5

5NG5 | pdb_00005ng5

5O66 | pdb_00005o66

5UU5 | pdb_00005uu5

5V5S | pdb_00005v5s

5W0S | pdb_00005w0s

6AMN | pdb_00006amn

6C6L | pdb_00006c6l

8E7S | pdb_00008e7s

8EC0 | pdb_00008ec0