RCSB PDB: Search

7F8T \| pdb_00007f8t	Download File View File

Re-refinement of the 2XRY X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei

Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Sugahara, M., Owada, S., Joti, Y., Tanaka, R., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanosarcina mazei
Macromolecule	Deoxyribodipyrimidine photolyase (protein)
Unique Ligands	FAD, GOL, SO4

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7VIW \| pdb_00007viw	Download File View File

Dark adapted MmCPDII during oxidized to semiquinone TR-SFX studies

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

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7VIX \| pdb_00007vix	Download File View File

class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (10 ns time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VIY \| pdb_00007viy	Download File View File

class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (50 ns time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

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7VIZ \| pdb_00007viz	Download File View File

class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (250 ns time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VJ0 \| pdb_00007vj0	Download File View File

class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (1 us time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VJ1 \| pdb_00007vj1	Download File View File

class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (10 us time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VJ2 \| pdb_00007vj2	Download File View File

class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (125 us time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, NA, SO4

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7VJ3 \| pdb_00007vj3	Download File View File

class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (400 us time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VJ4 \| pdb_00007vj4	Download File View File

class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (1 ms time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VJ5 \| pdb_00007vj5	Download File View File

class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (5 ms time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VJ6 \| pdb_00007vj6	Download File View File

SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the semiquinone state

Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Sugahara, M., Owada, S., Joti, Y., Tanaka, R., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VJ7 \| pdb_00007vj7	Download File View File

SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the fully reduced state

Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Sugahara, M., Owada, S., Joti, Y., Tanaka, R., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

Explore in 3D

7VJ8 \| pdb_00007vj8	Download File View File

SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the oxidized state

Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Sugahara, M., Owada, S., Joti, Y., Tanaka, R., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VJ9 \| pdb_00007vj9	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (semiquinone dark structure)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	FAD, SO4

Explore in 3D

7VJA \| pdb_00007vja	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (10 ns time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

Explore in 3D

7VJB \| pdb_00007vjb	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (30 ns time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

Explore in 3D

7VJC \| pdb_00007vjc	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (100 ns time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

Explore in 3D

7VJE \| pdb_00007vje	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (300 ns time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

Explore in 3D

7VJG \| pdb_00007vjg	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (1 us time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

Explore in 3D

7VJH \| pdb_00007vjh	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (5 us time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

Explore in 3D

7VJI \| pdb_00007vji	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (10 us time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

Explore in 3D

7VJJ \| pdb_00007vjj	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (30 us time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

Explore in 3D

7VJK \| pdb_00007vjk	Download File View File

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (100 us time-point)

Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2022) Nat Chem 14: 677-685

Released	2022-03-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DNA photolyase (protein)
Unique Ligands	DTT, FAD, SO4

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7YC7 \| pdb_00007yc7	Download File View File

Dark, fully reduced structure of the MmCPDII-DNA complex as produced at SwissFEL

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

7F8T | pdb_00007f8t

7VIW | pdb_00007viw

7VIX | pdb_00007vix

7VIY | pdb_00007viy

7VIZ | pdb_00007viz

7VJ0 | pdb_00007vj0

7VJ1 | pdb_00007vj1

7VJ2 | pdb_00007vj2

7VJ3 | pdb_00007vj3

7VJ4 | pdb_00007vj4

7VJ5 | pdb_00007vj5

7VJ6 | pdb_00007vj6

7VJ7 | pdb_00007vj7

7VJ8 | pdb_00007vj8

7VJ9 | pdb_00007vj9

7VJA | pdb_00007vja

7VJB | pdb_00007vjb

7VJC | pdb_00007vjc

7VJE | pdb_00007vje

7VJG | pdb_00007vjg

7VJH | pdb_00007vjh

7VJI | pdb_00007vji

7VJJ | pdb_00007vjj

7VJK | pdb_00007vjk

7YC7 | pdb_00007yc7