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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Feng, Y."

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Search Summary

This query matches 690 Structures.

Refinements

Structure Determination Methodology

experimental (690)

Scientific Name of Source Organism

	Homo sapiens (194)
	Escherichia coli (47)
	synthetic construct (47)
	Escherichia coli K-12 (43)
	Severe acute respiratory syndrome coronavirus 2 (31)
	Mycobacterium tuberculosis H37Rv (26)
	Mus musculus (20)
	Priestia megaterium NBRC 15308 = ATCC 14581 (19)
	Acetivibrio thermocellus (16)
	Clostridium beijerinckii (16)

More...

Taxonomy

	Bacteria (352)
	Eukaryota (287)
	Riboviria (54)
	other sequences (47)
	Duplodnaviria (34)
	Archaea (15)
	unclassified sequences (6)

Experimental Method

	X-RAY DIFFRACTION (475)
	ELECTRON MICROSCOPY (151)
	SOLUTION NMR (64)

Polymer Entity Type

	Protein (690)
	DNA (110)
	RNA (68)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (146)
	2.0 - 2.5 (161)
	2.5 - 3.0 (115)
	3.0 - 3.5 (94)
	3.5 - 4.0 (52)
	4.0 - 4.5 (32)
	> 4.5 (10)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (18)
	2000 - 2004 (12)
	2005 - 2009 (30)
	2010 - 2014 (106)
	2015 - 2019 (142)
	2020 - 2024 (367)
	2025 - 2029 (14)

Enzyme Classification Name

	Transferases (198)
	Hydrolases (123)
	Oxidoreductases (44)
	Lyases (16)
	Isomerases (16)
	Ligases (7)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (43)
	mpstruc (33)
	MemProtMD (13)
	OPM (12)

Symmetry Type

	Asymmetric (513)
	Cyclic (137)
	Dihedral (47)
	Icosahedral (1)
	Octahedral (1)

SCOP Classification

	All beta proteins (54)
	Alpha and beta proteins (a/b) (69)
	Alpha and beta proteins (a+b) (61)
	All alpha proteins (30)
	Artifacts (36)
	Multi-domain proteins (alpha and beta) (3)
	Membrane and cell surface proteins and peptides (1)
	Peptides (1)
	Small proteins (1)

AllSelected

1 to 25 of 690 Structures

Page 1 of 28

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1APC \| pdb_00001apc	Download File View File

SOLUTION STRUCTURE OF APOCYTOCHROME B562

Wand, A.J., Feng, Y., Sligar, S.G.

(1994) Nat Struct Biol 1: 30-35

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	CYTOCHROME B562 (protein)

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1FLA \| pdb_00001fla	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57D REDUCED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FLD \| pdb_00001fld	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57T OXIDIZED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FLN \| pdb_00001fln	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: D58P REDUCED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FVX \| pdb_00001fvx	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57N OXIDIZED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1HOV \| pdb_00001hov	Download File View File

SOLUTION STRUCTURE OF A CATALYTIC DOMAIN OF MMP-2 COMPLEXED WITH SC-74020

Feng, Y., Likos, J.J., Zhu, L., Woodward, H., Munie, G., McDonald, J.J., Stevens, A.M., Howard, C.P., De Crescenzo, G.A., Welsch, D., Shieh, H.-S., Stallings, W.C.

(2002) Biochim Biophys Acta 1598: 10-23

Released	2001-12-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MATRIX METALLOPROTEINASE-2 (protein)
Unique Ligands	CA, I52, ZN

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1JLI \| pdb_00001jli	Download File View File

HUMAN INTERLEUKIN 3 (IL-3) MUTANT WITH TRUNCATION AT BOTH N-AND C-TERMINI AND 14 RESIDUE CHANGES, NMR, MINIMIZED AVERAGE STRUCTURE

Feng, Y., Klein, B.K., Mcwherter, C.A.

(1996) J Mol Biology 259: 524-541

Released	1997-06-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	INTERLEUKIN 3 (protein)

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1KU5 \| pdb_00001ku5	Download File View File

Crystal Structure of recombinant histone HPhA from hyperthermophilic archaeon Pyrococcus horikoshii OT3

Li, T., Sun, F., Ji, X., Feng, Y., Rao, Z.

(2003) J Mol Biology 325: 1031-1037

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus horikoshii
Macromolecule	HPhA (protein)
Unique Ligands	ACT, SO4

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1MFW \| pdb_00001mfw	Download File View File

STRUCTURE OF N-TERMINAL DOUBLECORTIN DOMAIN FROM DCLK: SELENOMETHIONINE LABELED PROTEIN

Kim, M.H., Cierpickil, T., Derewenda, U., Krowarsch, D., Feng, Y., Devedjiev, Y., Dauter, Z., Walsh, C.A., Otlewski, J., Bushweller, J.H., Derewenda, Z.

(2003) Nat Struct Biol 10: 324-333

Released	2003-04-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	DOUBLECORTIN-LIKE KINASE (N-TERMINAL DOMAIN) (protein)
Unique Ligands	SO4

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1MG4 \| pdb_00001mg4	Download File View File

STRUCTURE OF N-TERMINAL DOUBLECORTIN DOMAIN FROM DCLK: WILD TYPE PROTEIN

Kim, M.H., Cierpickil, T., Derewenda, U., Krowarsch, D., Feng, Y., Devedjiev, Y., Dauter, Z., Walsh, C.A., Otlewski, J., Bushweller, J.H., Derewenda, Z.

(2003) Nat Struct Biol 10: 324-333

Released	2003-04-29
Method	X-RAY DIFFRACTION 1.504 Å
Organisms	Homo sapiens
Macromolecule	DOUBLECORTIN-LIKE KINASE (N-TERMINAL DOMAIN) (protein)
Unique Ligands	SO4

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1MJ3 \| pdb_00001mj3	Download File View File

Crystal Structure Analysis of rat enoyl-CoA hydratase in complex with hexadienoyl-CoA

Bell, A.F., Feng, Y., Hofstein, H.A., Parikh, S., Wu, J., Rudolph, M.J., Kisker, C., Tonge, P.J.

(2002) Chem Biol 9: 1247-1255

Released	2002-09-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	ENOYL-COA HYDRATASE, MITOCHONDRIAL (protein)
Unique Ligands	HXC

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1MJD \| pdb_00001mjd	Download File View File

Structure of N-terminal domain of human doublecortin

Kim, M.H., Cierpicki, T., Derewenda, U., Krowarsch, D., Feng, Y., Devedjiev, Y., Dauter, Z., Walsh, C.A., Otlewski, J., Bushweller, J.H., Derewenda, Z.S.

(2003) Nat Struct Biol 10: 324-333

Released	2003-04-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DOUBLECORTIN (protein)

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1OCD \| pdb_00001ocd	Download File View File

CYTOCHROME C (OXIDIZED) FROM EQUUS CABALLUS, NMR, MINIMIZED AVERAGE STRUCTURE

Qi, P.X., Beckman, R.A., Wand, A.J.

(1996) Biochemistry 35: 12275-12286

Released	1997-06-16
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC

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1Q51 \| pdb_00001q51	Download File View File

Crystal Structure of Mycobacterium tuberculosis MenB in Complex with Acetoacetyl-Coenzyme A, a Key Enzyme in Vitamin K2 Biosynthesis

Truglio, J.J., Theis, K., Feng, Y., Gajda, R., Machutta, C., Tonge, P.J., Kisker, C., TB Structural Genomics Consortium (TBSGC)

(2003) J Biological Chem 278: 42352-42360

Released	2004-01-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	menB (protein)
Unique Ligands	CAA

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1Q52 \| pdb_00001q52	Download File View File

Crystal Structure of Mycobacterium tuberculosis MenB, a Key Enzyme in Vitamin K2 Biosynthesis

Truglio, J.J., Theis, K., Feng, Y., Gajda, R., Machutta, C., Tonge, P.J., Kisker, C., TB Structural Genomics Consortium (TBSGC)

(2003) J Biological Chem 278: 42352-42360

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	menB (protein)

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1RKN \| pdb_00001rkn	Download File View File

Solution structure of 1-110 fragment of Staphylococcal Nuclease with G88W mutation

Liu, D.S., Feng, Y.G., Ye, K.Q., Shan, L., Wang, J.F.

(2007) Biophys J 92: 2090-2107

Released	2004-12-07
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	Thermonuclease (protein)

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1UDE \| pdb_00001ude	Download File View File

Crystal structure of the Inorganic pyrophosphatase from the hyperthermophilic archaeon Pyrococcus horikoshii OT3

Liu, B., Gao, R., Zhou, W., Bartlam, M., Rao, Z.

(2004) Biophys J 86: 420-427

Released	2004-01-20
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Inorganic pyrophosphatase (protein)

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1VE6 \| pdb_00001ve6	Download File View File

Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1

Bartlam, M., Wang, G., Gao, R., Yang, H., Zhao, X., Xie, G., Cao, S., Feng, Y., Rao, Z.

(2004) Structure 12: 1481-1488

Released	2004-11-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aeropyrum pernix
Macromolecule	Acylamino-acid-releasing enzyme (protein)
Unique Ligands	BOG, GOL

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1VE7 \| pdb_00001ve7	Download File View File

Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1 in complex with p-nitrophenyl phosphate

Bartlam, M., Wang, G., Gao, R., Yang, H., Zhao, X., Xie, G., Cao, S., Feng, Y., Rao, Z.

(2004) Structure 12: 1481-1488

Released	2004-11-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Aeropyrum pernix
Macromolecule	Acylamino-acid-releasing enzyme (protein)
Unique Ligands	4NP, GOL

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1Y9X \| pdb_00001y9x	Download File View File

Solution structure of Archaeon DNA-binding protein ssh10b

Cui, Q., Tong, Y., Wang, J.

(2008) Biochemistry 47: 11212-11221

Released	2005-06-21
Method	SOLUTION NMR
Organisms	Saccharolobus shibatae
Macromolecule	DNA/RNA-binding protein Alba 1 (protein)

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1YYB \| pdb_00001yyb	Download File View File

Solution structure of 1-26 fragment of human programmed cell death 5 protein

Liu, D.S., Feng, Y.G., Yao, H.W., Wang, J.F.

(2005) Biochem J 392: 47-54

Released	2005-09-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Programmed cell death protein 5 (protein)

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1Z7P \| pdb_00001z7p	Download File View File

Solution structure of reduced glutaredoxin C1 from Populus tremula x tremuloides

Feng, Y., Zhong, N., Rouhier, N., Jacquot, J.P., Xia, B.

(2006) Biochemistry 45: 7998-8008

Released	2006-03-28
Method	SOLUTION NMR
Organisms	Populus tremula x Populus tremuloides
Macromolecule	glutaredoxin (protein)

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1Z7R \| pdb_00001z7r	Download File View File

Solution Structure of reduced glutaredoxin C1 from Populus tremula x tremuloides

Feng, Y., Zhong, N., Rouhier, N., Jacquot, J.P., Xia, B.

(2006) Biochemistry 45: 7998-8008

Released	2006-03-28
Method	SOLUTION NMR
Organisms	Populus tremula x Populus tremuloides
Macromolecule	glutaredoxin (protein)

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2DD8 \| pdb_00002dd8	Download File View File

Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody

Prabakaran, P., Gan, J.H., Feng, Y., Zhu, Z.Y., Xiao, X.D., Ji, X., Dimitrov, D.S.

(2006) J Biological Chem 281: 15829-15836

Released	2006-04-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome-related coronavirus
Macromolecule	IGG Heavy Chain (protein) IGG Light Chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, PO4