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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Emini, E.A."

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Search Summary

This query matches 83 Structures.

Refinements

Structure Determination Methodology

experimental (83)

Scientific Name of Source Organism

	Pyrococcus furiosus (10)
	Saccharolobus solfataricus P2 (9)
	Thermotoga maritima (8)
	Desulfitobacterium hafniense DCB-2 (6)
	Pyrococcus furiosus DSM 3638 (6)
	synthetic construct (6)
	Thermus thermophilus (5)
	Escherichia coli (4)
	Lymnaea stagnalis (4)
	Geobacillus thermodenitrificans (3)

More...

Taxonomy

	Bacteria (45)
	Archaea (34)
	other sequences (6)
	Eukaryota (4)

Experimental Method

	X-RAY DIFFRACTION (74)
	ELECTRON MICROSCOPY (8)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (83)
	DNA (16)
	RNA (10)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (13)
	2.0 - 2.5 (29)
	2.5 - 3.0 (27)
	3.0 - 3.5 (9)
	3.5 - 4.0 (2)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (11)
	2005 - 2009 (32)
	2010 - 2014 (24)
	2015 - 2019 (4)
	2020 - 2024 (5)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (23)
	Lyases (11)
	Isomerases (11)
	Oxidoreductases (6)
	Transferases (1)

Symmetry Type

	Asymmetric (37)
	Cyclic (32)
	Dihedral (25)
	Octahedral (1)

SCOP Classification

	All beta proteins (25)
	Alpha and beta proteins (a/b) (11)
	All alpha proteins (11)
	Alpha and beta proteins (a+b) (5)
	Artifacts (13)

AllSelected

1 to 25 of 83 Structures

Page 1 of 4

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1B3B \| pdb_00001b3b	Download File View File

THERMOTOGA MARITIMA GLUTAMATE DEHYDROGENASE MUTANT N97D, G376K

Knapp, S., Lebbink, J.H.G., Van Der Oost, J., Devos, W.M., Rice, D., Ladenstein, R.

(1998) J Mol Biology 280: 287-296

Released	1999-12-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Thermotoga maritima
Macromolecule	PROTEIN (GLUTAMATE DEHYDROGENASE) (protein)

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1CYW \| pdb_00001cyw	Download File View File

QUINOL OXIDASE (PERIPLASMIC FRAGMENT OF SUBUNIT II) (CYOA)

Wilmanns, M., Lappalainen, P., Kelly, M., Sauer-Eriksson, E., Saraste, M.

(1995) Proc Natl Acad Sci U S A 92: 11955-11959

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	CYOA (protein)

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1CYX \| pdb_00001cyx	Download File View File

QUINOL OXIDASE (PERIPLASMIC FRAGMENT OF SUBUNIT II WITH ENGINEERED CU-A BINDING SITE)(CYOA)

Wilmanns, M., Lappalainen, P., Kelly, M., Sauer-Eriksson, E., Saraste, M.

(1995) Proc Natl Acad Sci U S A 92: 11955-11959

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	CYOA (protein)
Unique Ligands	CUA

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1I1G \| pdb_00001i1g	Download File View File

CRYSTAL STRUCTURE OF THE LRP-LIKE TRANSCRIPTIONAL REGULATOR FROM THE ARCHAEON PYROCOCCUS FURIOSUS

Leonard, P.M., Smits, S.H.J., Sedelnikova, S.E., Brinkman, A.B., de Vos, W.M., van der Oost, J., Rice, D.W., Rafferty, J.B.

(2001) EMBO J 20: 990-997

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pyrococcus furiosus
Macromolecule	TRANSCRIPTIONAL REGULATOR LRPA (protein)

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1I9B \| pdb_00001i9b	Download File View File

X-RAY STRUCTURE OF ACETYLCHOLINE BINDING PROTEIN (ACHBP)

Brejc, K., van Dijk, W.J., Klaassen, R., Schuurmans, M., van der Oost, J., Smit, A.B., Sixma, T.K.

(2001) Nature 411: 269-276

Released	2001-05-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Lymnaea stagnalis
Macromolecule	ACETYLCHOLINE BINDING PROTEIN (protein)
Unique Ligands	CA, EPE

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1R6V \| pdb_00001r6v	Download File View File

Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin

Kim, J.S., Kluskens, L.D., de Vos, W.M., Huber, R., van der Oost, J.

(2004) J Mol Biology 335: 787-797

Released	2004-10-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fervidobacterium pennivorans
Macromolecule	subtilisin-like serine protease (protein)
Unique Ligands	CA

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1S4E \| pdb_00001s4e	Download File View File

Pyrococcus furiosus galactokinase in complex with galactose, ADP and magnesium

Hartley, A., Glynn, S.E., Barynin, V., Baker, P.J., Sedelnikova, S.E., Verhees, C., de Geus, D., van der Oost, J., Timson, D.J., Reece, R.J., Rice, D.W.

(2004) J Mol Biology 337: 387-398

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pyrococcus furiosus
Macromolecule	Galactokinase (protein)
Unique Ligands	ADP, GLA, MG

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1UV6 \| pdb_00001uv6	Download File View File

X-ray structure of acetylcholine binding protein (AChBP) in complex with carbamylcholine

Celie, P.H.N., Van Rossum-fikkert, S.E., Van Dijk, W.J., Brejc, K., Smit, A.B., Sixma, T.K.

(2004) Neuron 41: 907

Released	2004-03-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lymnaea stagnalis
Macromolecule	ACETYLCHOLINE-BINDING PROTEIN (protein)
Unique Ligands	CCE

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1UW6 \| pdb_00001uw6	Download File View File

X-ray structure of acetylcholine binding protein (AChBP) in complex with nicotine

Celie, P.H.N., Van Rossum-fikkert, S.E., Van Dijk, W.J., Brejc, K., Smit, A.B., Sixma, T.K.

(2004) Neuron 41: 907

Released	2004-03-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lymnaea stagnalis
Macromolecule	ACETYLCHOLINE-BINDING PROTEIN (protein)
Unique Ligands	NCT

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1UX2 \| pdb_00001ux2	Download File View File

X-ray structure of acetylcholine binding protein (AChBP)

Celie, P.H.N., Van Rossum-fikkert, S.E., Van Dijk, W.J., Brejc, K., Smit, A.B., Sixma, T.K.

(2004) Neuron 41: 907

Released	2004-03-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lymnaea stagnalis
Macromolecule	ACETYLCHOLINE BINDING PROTEIN (protein)
Unique Ligands	EPE, NAG, NH4, SO4

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1VLQ \| pdb_00001vlq	Download File View File

Crystal structure of Acetyl xylan esterase (TM0077) from Thermotoga maritima at 2.10 A resolution

Joint Center for Structural Genomics (JCSG)

(2012) Proteins 80: 1545-1559

Released	2004-08-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	acetyl xylan esterase (protein)
Unique Ligands	GOL

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1X7N \| pdb_00001x7n	Download File View File

The crystal structure of Pyrococcus furiosus phosphoglucose isomerase with bound 5-phospho-D-arabinonate and Manganese

Berrisford, J.M., Akerboom, J., Brouns, S., Sedelnikova, S.E., Turnbull, A.P., van der Oost, J., Salmon, L., Hardre, R., Murray, I.A., Blackburn, G.M., Rice, D.W., Baker, P.J.

(2004) J Mol Biology 343: 649-657

Released	2004-10-12
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Pyrococcus furiosus
Macromolecule	Glucose-6-phosphate isomerase (protein)
Unique Ligands	MN, PA5

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1X82 \| pdb_00001x82	Download File View File

CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE FROM PYROCOCCUS FURIOSUS WITH BOUND 5-phospho-D-arabinonate

Berrisford, J.M., Akerboom, J., Brouns, S., Sedelnikova, S.E., Turnbull, A.P., van der Oost, J., Salmon, L., Hardre, R., Murray, I.A., Blackburn, G.M., Rice, D.W., Baker, P.J.

(2004) J Mol Biology 343: 649-657

Released	2004-10-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyrococcus furiosus
Macromolecule	Glucose-6-phosphate isomerase (protein)
Unique Ligands	PA5

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1X8E \| pdb_00001x8e	Download File View File

Crystal structure of Pyrococcus furiosus phosphoglucose isomerase free enzyme

Berrisford, J.M., Akerboom, J., Brouns, S., Sedelnikova, S.E., Turnbull, A.P., van der Oost, J., Salmon, L., Hardre, R., Murray, I.A., Blackburn, G.M., Rice, D.W., Baker, P.J.

(2004) J Mol Biology 343: 649-657

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pyrococcus furiosus
Macromolecule	Glucose-6-phosphate isomerase (protein)

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1XRK \| pdb_00001xrk	Download File View File

Crystal structure of a mutant bleomycin binding protein from Streptoalloteichus hindustanus displaying increased thermostability

Brouns, S.J.J., Wu, H., Akerboom, J., Turnbull, A.P., de Vos, W.M., Van der Oost, J.

(2005) J Biological Chem 280: 11422-11431

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptoalloteichus hindustanus
Macromolecule	Bleomycin resistance protein (protein)
Unique Ligands	BLM, SO4

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2CFX \| pdb_00002cfx	Download File View File

Structure of B.subtilis LrpC

Thaw, P., Rafferty, J.B.

(2006) Nucleic Acids Res 34: 1439

Released	2006-03-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus subtilis
Macromolecule	HTH-TYPE TRANSCRIPTIONAL REGULATOR LRPC (protein)

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2CG4 \| pdb_00002cg4	Download File View File

Structure of E.coli AsnC

Thaw, P., Sedelnikova, S.E., Muranova, T., Wiese, S., Ayora, S., Alonso, J.C., Brinkman, A.B., Akerboom, J., van der Oost, J., Rafferty, J.B.

(2006) Nucleic Acids Res 34: 1439

Released	2006-04-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	REGULATORY PROTEIN ASNC (protein)
Unique Ligands	ASN, MG

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2GC0 \| pdb_00002gc0	Download File View File

The crystal structure of phosphoglucose isomerase from Pyrococcus furiosus in complex with 5-phospho-D-arabinonohydroxamate and zinc

Berrisford, J.M., Rice, D.W., Baker, P.J.

(2006) J Mol Biology 358: 1353-1366

Released	2006-04-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus furiosus
Macromolecule	Glucose-6-phosphate isomerase (protein)
Unique Ligands	PAN, ZN

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2GC1 \| pdb_00002gc1	Download File View File

The crystal structure of phosphoglucose isomerase from Pyrococcus furiosus in complex with sorbitol 6-phosphate and zinc

Berrisford, J.M., Rice, D.W., Baker, P.J.

(2006) J Mol Biology 358: 1353-1366

Released	2006-04-11
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pyrococcus furiosus
Macromolecule	Glucose-6-phosphate isomerase (protein)
Unique Ligands	S6P, ZN

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2GC2 \| pdb_00002gc2	Download File View File

The crystal structure of phosphoglucose isomerase from Pyrococcus furiosus in complex with Fructose 6-phosphate and zinc

Berrisford, J.M., Rice, D.W., Baker, P.J.

(2006) J Mol Biology 358: 1353-1366

Released	2006-04-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus furiosus
Macromolecule	Glucose-6-phosphate isomerase (protein)
Unique Ligands	F6R, ZN

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2GC3 \| pdb_00002gc3	Download File View File

The crystal structure of phosphoglucose isomerase from Pyrococcus furiosus in complex with mannose 6-phosphate and zinc

Berrisford, J.M., Rice, D.W., Baker, P.J.

(2006) J Mol Biology 358: 1353-1366

Released	2006-04-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus furiosus
Macromolecule	Glucose-6-phosphate isomerase (protein)
Unique Ligands	M6P, ZN

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2H6B \| pdb_00002h6b	Download File View File

Crystal structure of oxidized CprK in complex with o-chlorophenolacetic acid

Joyce, M.G., Levy, C., Leys, D.

(2006) J Biological Chem 281: 28318-28325

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Desulfitobacterium hafniense
Macromolecule	ChloroPhenol Reduction gene K (protein)
Unique Ligands	3C4, SO4

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2H6C \| pdb_00002h6c	Download File View File

Crystal structure of reduced CprK in absence of any ligand

Levy, C., Leys, D.

(2006) J Biological Chem 281: 28318-28325

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Desulfitobacterium dehalogenans
Macromolecule	ChloroPhenol Reduction gene K (protein)

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2H6E \| pdb_00002h6e	Download File View File

Crystal structure of the D-arabinose dehydrogenase from Sulfolobus solfataricus

Brouns, S.J.J., Turnbull, A.P., Akerboom, J., Willemen, H.L.D.M., De Vos, W.M., Van der Oost, J.

(2007) J Mol Biology 371: 1249-1260

Released	2007-06-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	D-arabinose 1-dehydrogenase (protein)
Unique Ligands	ZN