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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Damry, A.M."

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Escherichia coli (15)
	Escherichia coli 908573 (6)
	Streptococcus sp. GX7805 (4)
	Homo sapiens (1)
	Piscinibacter sakaiensis (1)
	Streptococcus sp. 'group G (1)

Taxonomy

	Bacteria (27)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (23)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (28)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (10)
	2.5 - 3.0 (3)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (23)

Enzyme Classification Name

	Transferases (22)
	Hydrolases (1)

Symmetry Type

	Cyclic (15)
	Asymmetric (6)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	Artifacts (3)

AllSelected

1 to 25 of 28 Structures

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5UB0 \| pdb_00005ub0	Download File View File

Solution NMR Structure of NERD-C, a natively folded tetramutant of the B1 domain of streptococcal protein G (GB1)

Damry, A.M., Davey, J.A., Goto, N.K., Chica, R.A.

(2017) Nat Chem Biol 13: 1280-1285

Released	2017-08-23
Method	SOLUTION NMR
Organisms	Streptococcus sp. GX7805
Macromolecule	Immunoglobulin G-binding protein G (protein)

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5UBS \| pdb_00005ubs	Download File View File

Solution NMR Structure of NERD-S, a natively folded pentamutant of the B1 domain of streptococcal protein G (GB1) with a solvent-exposed Trp43

Damry, A.M., Davey, J.A., Goto, N.K., Chica, R.A.

(2017) Nat Chem Biol 13: 1280-1285

Released	2017-08-23
Method	SOLUTION NMR
Organisms	Streptococcus sp. GX7805
Macromolecule	Immunoglobulin G-binding protein G (protein)

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5UCE \| pdb_00005uce	Download File View File

Solution NMR structure of the major species of DANCER-2, a dynamic and natively folded pentamutant of the B1 domain of streptococcal protein G (GB1)

Damry, A.M., Davey, J.A., Goto, N.K., Chica, R.A.

(2017) Nat Chem Biol 13: 1280-1285

Released	2017-08-23
Method	SOLUTION NMR
Organisms	Streptococcus sp. GX7805
Macromolecule	Immunoglobulin G-binding protein G (protein)

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5UCF \| pdb_00005ucf	Download File View File

Solution NMR-derived model of the minor species of DANCER-2, a dynamic and natively folded pentamutant of the B1 domain of streptococcal protein G (GB1)

Damry, A.M., Davey, J.A., Goto, N.K., Chica, R.A.

(2017) Nat Chem Biol 13: 1280-1285

Released	2017-08-23
Method	SOLUTION NMR
Organisms	Streptococcus sp. GX7805
Macromolecule	Immunoglobulin G-binding protein G (protein)

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6NJF \| pdb_00006njf	Download File View File

Solution NMR Structure of DANCER3-F34A, a rigid and natively folded single mutant of the dynamic protein DANCER-3

Damry, A.M., Mayer, M.M., Goto, N.K., Chica, R.A.

(2019) Commun Biol 2: 433-433

Released	2019-08-21
Method	SOLUTION NMR
Organisms	Streptococcus sp. 'group G
Macromolecule	Immunoglobulin G-binding protein G (protein)

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7LL3 \| pdb_00007ll3	Download File View File

S-adenosylmethionine synthetase co-crystallized with UppNHp

Tan, L.L., Jackson, C.J.

(2021) JACS Au 1: 2349-2360

Released	2021-03-31
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Escherichia coli 908573
Macromolecule	S-adenosylmethionine synthase (protein)
Unique Ligands	EDO, MG, PPK, UNP

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7LNH \| pdb_00007lnh	Download File View File

S-adenosylmethionine synthetase co-crystallized with UppNHp

Tan, L.L., Jackson, C.J.

(2021) JACS Au 1: 2349-2360

Released	2022-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine synthase isoform type-2 (protein)
Unique Ligands	EDO, YQP

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7LNN \| pdb_00007lnn	Download File View File

E. coli S-adenosyl methionine transferase co-crystallized with guanosine-5'-imidotriphosphate

Tan, L.L., Jackson, C.J.

(2021) JACS Au 1: 2349-2360

Released	2021-03-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli 908573
Macromolecule	S-adenosylmethionine synthase (protein)
Unique Ligands	EDO, MG, PO4, PPK

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7LO2 \| pdb_00007lo2	Download File View File

S-adenosylmethionine synthetase cocrystallized with CTP

Tan, L.L., Jackson, C.J.

(2021) JACS Au 1: 2349-2360

Released	2021-03-31
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Escherichia coli 908573
Macromolecule	S-adenosylmethionine synthase (protein)
Unique Ligands	EDO, K, MG, PG4, PO4, POP

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7LOO \| pdb_00007loo	Download File View File

S-adenosyl methionine transferase cocrystallized with ATP

Jackson, C.J., Tan, L.L., Laurino, P.

(2021) JACS Au 1: 2349-2360

Released	2021-09-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli 908573
Macromolecule	S-adenosylmethionine synthase (protein)
Unique Ligands	EDO, K, MG, PO4, POP, SAM

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7LOW \| pdb_00007low	Download File View File

S-adenosylmethionine synthetase

Tan, L.L., Jackson, C.J.

(2021) JACS Au 1: 2349-2360

Released	2021-03-31
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Escherichia coli 908573
Macromolecule	S-adenosylmethionine synthase (protein)
Unique Ligands	EDO, MG, PO4, POP

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7LOZ \| pdb_00007loz	Download File View File

S-adenosylmethionine synthetase

Tan, L.L., Jackson, C.J.

(2021) JACS Au 1: 2349-2360

Released	2021-03-31
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli 908573
Macromolecule	S-adenosylmethionine synthase (protein)
Unique Ligands	EDO, MG, PO4, POP

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8E9C \| pdb_00008e9c	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant AIFS in the ligand-free form at 100 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9D \| pdb_00008e9d	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant AIFS bound to maleic acid at 100 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9J \| pdb_00008e9j	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant HEX in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9K \| pdb_00008e9k	Download File View File

Crystal structure of wild-type E. coli aspartate aminotransferase bound to maleate at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9L \| pdb_00008e9l	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFIT in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9M \| pdb_00008e9m	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFIT bound to maleic acid at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9N \| pdb_00008e9n	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFIY in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9O \| pdb_00008e9o	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFIY bound to maleic acid at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9P \| pdb_00008e9p	Download File View File

Crystal structure of wild-type E. coli aspartate aminotransferase in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9Q \| pdb_00008e9q	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant HEX bound to maleic acid at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9R \| pdb_00008e9r	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFCS in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9S \| pdb_00008e9s	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFCS bound to maleic acid at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9T \| pdb_00008e9t	Download File View File

Crystal structure of wild-type E. coli aspartate aminotransferase in the ligand-free form at 303 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

1 to 25 of 28 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5UB0 | pdb_00005ub0

5UBS | pdb_00005ubs

5UCE | pdb_00005uce

5UCF | pdb_00005ucf

6NJF | pdb_00006njf

7LL3 | pdb_00007ll3

7LNH | pdb_00007lnh

7LNN | pdb_00007lnn

7LO2 | pdb_00007lo2

7LOO | pdb_00007loo

7LOW | pdb_00007low

7LOZ | pdb_00007loz

8E9C | pdb_00008e9c

8E9D | pdb_00008e9d

8E9J | pdb_00008e9j

8E9K | pdb_00008e9k

8E9L | pdb_00008e9l

8E9M | pdb_00008e9m

8E9N | pdb_00008e9n

8E9O | pdb_00008e9o

8E9P | pdb_00008e9p

8E9Q | pdb_00008e9q

8E9R | pdb_00008e9r

8E9S | pdb_00008e9s

8E9T | pdb_00008e9t