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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cai, Z."

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Search Summary

This query matches 95 Structures.

Refinements

Structure Determination Methodology

experimental (95)

Scientific Name of Source Organism

	synthetic construct (25)
	Escherichia coli (16)
	Homo sapiens (14)
	Escherichia coli K-12 (7)
	Thermus thermophilus HB8 (7)
	Saccharomyces cerevisiae S288C (5)
	Bifidobacterium angulatum (4)
	Ideonella sp. B508-1 (4)
	Saccharomyces cerevisiae (4)
	Acidobacteriaceae bacterium KBS 83 (2)

More...

Taxonomy

	Bacteria (32)
	other sequences (25)
	Eukaryota (23)
	Duplodnaviria (2)
	unclassified sequences (2)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (93)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	RNA (87)
	Protein (28)
	NA-hybrid (8)
	Other (1)

Refinement Resolution (Å)

	0.5 - 1.0 (9)
	1.0 - 1.5 (15)
	1.5 - 2.0 (9)
	2.0 - 2.5 (17)
	2.5 - 3.0 (26)
	3.0 - 3.5 (15)
	3.5 - 4.0 (4)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (18)
	2010 - 2014 (8)
	2015 - 2019 (32)
	2020 - 2024 (35)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (27)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	All beta proteins (1)

AllSelected

1 to 25 of 95 Structures

Page 1 of 4

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1Y26 \| pdb_00001y26	Download File View File

A-riboswitch-adenine complex

Serganov, A., Yuan, Y.R., Patel, D.J.

(2004) Chem Biol 11: 1729-1741

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio vulnificus
Macromolecule	Vibrio vulnificus A-riboswitch (nucleic acid)
Unique Ligands	ADE, MG

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1Y27 \| pdb_00001y27	Download File View File

G-riboswitch-guanine complex

Serganov, A., Yuan, Y.R., Patel, D.J.

(2004) Chem Biol 11: 1729-1741

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus subtilis
Macromolecule	Bacillus subtilis xpt (nucleic acid)
Unique Ligands	GUN

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1YKQ \| pdb_00001ykq	Download File View File

Crystal structure of Diels-Alder ribozyme

Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J.

(2005) Nat Struct Mol Biol 12: 218-224

Released	2005-02-22
Method	X-RAY DIFFRACTION 3.5 Å
Macromolecule	Diels-Alder ribozyme (nucleic acid)
Unique Ligands	CD, MG

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1YKV \| pdb_00001ykv	Download File View File

Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene

Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J.

(2005) Nat Struct Mol Biol 12: 218-224

Released	2005-02-22
Method	X-RAY DIFFRACTION 3.3 Å
Macromolecule	Diels-Alder ribozyme (nucleic acid)
Unique Ligands	DAI, MG

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1YLS \| pdb_00001yls	Download File View File

Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene

Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J.

(2005) Nat Struct Mol Biol 12: 218-224

Released	2005-02-22
Method	X-RAY DIFFRACTION 3 Å
Macromolecule	RNA Diels-Alder ribozyme (nucleic acid)
Unique Ligands	DAI, MG

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2H1M \| pdb_00002h1m	Download File View File

Synthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAs

Serganov, A.A.

(2006) J Am Chem Soc 128: 9909-9918

Released	2006-07-18
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	5'-R(GPCPAP(XUG)PAPGPUPUPAPAPAPUPCPUPGPC)-3' (nucleic acid)
Unique Ligands	SO4

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2Q1O \| pdb_00002q1o	Download File View File

Crystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)

Li, F., Pallan, P.S.

(2007) Nucleic Acids Res 35: 6424-6438

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.1 Å
Macromolecule	RNA (5'-R(CPGPCP(NF2)PAPAPUPUPGPGPCPG)-3') (nucleic acid)

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2Q1R \| pdb_00002q1r	Download File View File

Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch.

Li, F., Pallan, P.S.

(2007) Nucleic Acids Res 35: 6424-6438

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.12 Å
Macromolecule	RNA (5'-R(CPGPCPGPAPAPUPUPAPGPCPG)-3') (nucleic acid)
Unique Ligands	MG

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2QEK \| pdb_00002qek	Download File View File

HIV-1 subtype F DIS RNA extended duplex form

Freisz, S., Ennifar, E., Dumas, P.

(2008) Angew Chem Int Ed Engl 47: 4110-4113

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	HIV-1 subtype F DIS genomic RNA (nucleic acid)
Unique Ligands	K, MG

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3C3Z \| pdb_00003c3z	Download File View File

Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin

Freisz, S., Lang, K., Micura, R., Dumas, P., Ennifar, E.

(2008) Angew Chem Int Ed Engl 47: 4110-4113

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	HIV-1 subtype F genomic RNA (hybrid)
Unique Ligands	RIO

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3C44 \| pdb_00003c44	Download File View File

Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycin

Freisz, S., Ennifar, E., Dumas, P.

(2008) Angew Chem Int Ed Engl 47: 4110-4113

Released	2008-05-06
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	HIV-1 subtype F genomic RNA (nucleic acid)
Unique Ligands	CL, K, PAR

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3C5D \| pdb_00003c5d	Download File View File

Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to lividomycin

Freisz, S., Lang, K., Micura, R., Dumas, P., Ennifar, E.

(2008) Angew Chem Int Ed Engl 47: 4110-4113

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	'HIV-1 subtype F genomic RNA (hybrid)
Unique Ligands	K, LIV

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3C7R \| pdb_00003c7r	Download File View File

Crystal Structure of HIV-1 subtype F DIS extended duplex RNA bound to neomycin

Freisz, S., Lang, K., Micura, R., Dumas, P., Ennifar, E.

(2008) Angew Chem Int Ed Engl 47: 4110-4113

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	HIV-1 subtype F genomic RNA (hybrid)
Unique Ligands	K, NMY

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3CJZ \| pdb_00003cjz	Download File View File

Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m22G:A pairs

Pallan, P.S., Kreutz, C., Bosio, S., Micura, R., Egli, M.

(2008) RNA 14: 2125-2135

Released	2008-10-14
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	RNA (5'-R(GPGPAPCPGP(M2G)PAPCPGPUPCPCP*U)-3') (nucleic acid)

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3DVV \| pdb_00003dvv	Download File View File

Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)

Ennifar, E., Dumas, P., Olieric, V.

To be published

Released	2008-08-12
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	HIV-1 genomic RNA (nucleic acid)
Unique Ligands	CL, K, RIO

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3DVZ \| pdb_00003dvz	Download File View File

Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA

Olieric, V., Rieder, U., Lang, K., Serganov, A., Schulze-Briese, C., Micura, R., Dumas, P., Ennifar, E.

(2009) RNA 15: 707-715

Released	2009-03-24
Method	X-RAY DIFFRACTION 1 Å
Macromolecule	Sarcin/Ricin Domain from E. Coli 23 S rRNA (nucleic acid)
Unique Ligands	GOL

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3DW4 \| pdb_00003dw4	Download File View File

Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modified

Olieric, V., Rieder, U., Lang, K., Serganov, A., Schulze-Briese, C., Micura, R., Dumas, P., Ennifar, E.

(2009) RNA 15: 707-715

Released	2009-03-24
Method	X-RAY DIFFRACTION 0.97 Å
Macromolecule	Sarcin/Ricin Domain from E. Coli 23 S rRNA (nucleic acid)
Unique Ligands	GOL

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3DW5 \| pdb_00003dw5	Download File View File

Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified

Olieric, V., Rieder, U., Lang, K., Serganov, A., Schulze-Briese, C., Micura, R., Dumas, P., Ennifar, E.

(2009) RNA 15: 707-715

Released	2009-03-24
Method	X-RAY DIFFRACTION 0.96 Å
Macromolecule	Sarcin/Ricin Domain from E. Coli 23 S rRNA (nucleic acid)

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3DW6 \| pdb_00003dw6	Download File View File

Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified

Olieric, V., Rieder, U., Lang, K., Serganov, A., Schulze-Briese, C., Micura, R., Dumas, P., Ennifar, E.

(2009) RNA 15: 707-715

Released	2009-03-24
Method	X-RAY DIFFRACTION 1 Å
Macromolecule	Sarcin/Ricin Domain from E. Coli 23 S rRNA (nucleic acid)
Unique Ligands	GOL

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3DW7 \| pdb_00003dw7	Download File View File

Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modified

Olieric, V., Rieder, U., Lang, K., Serganov, A., Schulze-Briese, C., Micura, R., Dumas, P., Ennifar, E.

(2009) RNA 15: 707-715

Released	2009-03-24
Method	X-RAY DIFFRACTION 1 Å
Macromolecule	Sarcin/Ricin Domain from E. Coli 23 S rRNA (nucleic acid)

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3NCU \| pdb_00003ncu	Download File View File

Structural and functional insights into pattern recognition by the innate immune receptor RIG-I

Sheng, G., Li, H.

(2010) Nat Struct Mol Biol 17: 781-787

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	RIG-I (protein) 5'-R((GDP)PAPCPGPCPUPAPGPCPGPUPC)-3' (nucleic acid)
Unique Ligands	ZN