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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Brooks, C.L."

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Search Summary

This query matches 74 Structures.

Refinements

Structure Determination Methodology

experimental (74)

Scientific Name of Source Organism

	Mus musculus (46)
	Homo sapiens (8)
	Escherichia coli (6)
	Camelus dromedarius (5)
	Saccharomyces cerevisiae (4)
	Listeria monocytogenes (3)
	Lama glama (2)
	Mycobacterium tuberculosis (2)
	Haemophilus influenzae (1)
	Moraxella bovis (1)

More...

Taxonomy

	Eukaryota (63)
	Bacteria (14)

Experimental Method

	X-RAY DIFFRACTION (72)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (74)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (39)
	2.0 - 2.5 (21)
	2.5 - 3.0 (10)
	> 4.5 (2)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (19)
	2010 - 2014 (24)
	2015 - 2019 (19)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (2)

Membrane Protein Annotation

	MemProtMD (3)
	PDBTM (3)
	mpstruc (1)

Symmetry Type

	Asymmetric (67)
	Cyclic (6)
	Dihedral (3)

SCOP Classification

	All beta proteins (49)
	Coiled coil proteins (4)
	Alpha and beta proteins (a/b) (5)
	All alpha proteins (2)
	Artifacts (3)
	Alpha and beta proteins (a+b) (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 74 Structures

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1W5H \| pdb_00001w5h	Download File View File

An anti-parallel four helix bundle.

Yadav, M.K., Leman, L.J., Stout, C.D., Ghadiri, M.R.

(2006) Biochemistry 45: 4463

Released	2004-09-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GENERAL CONTROL PROTEIN GCN4 (protein)

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1W5J \| pdb_00001w5j	Download File View File

AN ANTI-PARALLEL FOUR HELIX BUNDLE

Yadav, M.K., Leman, L.J., Stout, C.D., Ghadiri, M.R.

(2006) Biochemistry 45: 4463

Released	2004-09-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GENERAL CONTROL PROTEIN GCN4 (protein)

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1W5K \| pdb_00001w5k	Download File View File

AN ANTI-PARALLEL FOUR HELIX BUNDLE

Yadav, M.K., Leman, L.J., Stout, C.D., Ghadiri, M.R.

(2006) Biochemistry 45: 4463

Released	2004-09-24
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GENERAL CONTROL PROTEIN GCN4 (protein)

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1W5L \| pdb_00001w5l	Download File View File

An anti-parallel to parallel switch.

Yadav, M.K., Leman, L.J., Stout, C.D., Ghadiri, M.R.

(2006) Biochemistry 45: 4463

Released	2004-09-24
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GENERAL CONTROL PROTEIN GCN4 (protein)

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2AKH \| pdb_00002akh	Download File View File

Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli

Mitra, K.M., Schaffitzel, C., Shaikh, T., Tama, F., Jenni, S., Brooks III, C.L., Ban, N., Frank, J.

(2005) Nature 438: 318-324

Released	2005-11-15
Method	ELECTRON MICROSCOPY 14.9 Å
Organisms	Escherichia coli
Macromolecule	Preprotein translocase secE subunit (protein) Preprotein translocase secY subunit (protein) Protein-export membrane protein secG (protein)

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2AKI \| pdb_00002aki	Download File View File

Normal mode-based flexible fitted coordinates of a translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli

Mitra, K., Schaffitzel, C., Shaikh, T., Tama, F., Jenni, S., Brooks III, C.L., Ban, N., Frank, J.

(2005) Nature 438: 318-324

Released	2005-11-15
Method	ELECTRON MICROSCOPY 14.9 Å
Organisms	Escherichia coli
Macromolecule	Preprotein translocase secE subunit (protein) Preprotein translocase secY subunit (protein) Protein-export membrane protein secG (protein)

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2R1W \| pdb_00002r1w	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDB

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2R1X \| pdb_00002r1x	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDD

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2R1Y \| pdb_00002r1y	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDO, KDR

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2R23 \| pdb_00002r23	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KO1

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2R2B \| pdb_00002r2b	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	ZN
Unique branched monosaccharides	KDA, KDO

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2R2E \| pdb_00002r2e	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	KDE

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2R2H \| pdb_00002r2h	Download File View File

Structure of S25-2 in Complex with Ko

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	KO2, MG, ZN

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3BPC \| pdb_00003bpc	Download File View File

co-crystal structure of S25-2 Fab in complex with 5-deoxy-4-epi-2,3-dehydro Kdo (4.8) Kdo

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDB

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3DUR \| pdb_00003dur	Download File View File

Crystal structure of SAG173-04

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG173-04 (protein)
Unique Ligands	KDO, MG, PG4

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3DUS \| pdb_00003dus	Download File View File

Crystal structure of SAG506-01, orthorhombic, twinned, crystal 1

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG506-01 (protein)
Unique Ligands	KDO, MG, PG4

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3DUU \| pdb_00003duu	Download File View File

Crystal structure of SAG506-01, orthorhombic, twinned, crystal 2

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG506-01 (protein)
Unique Ligands	KDO, MG, PG4

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3DV4 \| pdb_00003dv4	Download File View File

Crystal structure of SAG506-01, tetragonal, crystal 1

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG506-01 (protein)
Unique Ligands	KDO, MG, PG4

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3DV6 \| pdb_00003dv6	Download File View File

Crystal structure of SAG506-01, tetragonal, crystal 2

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG506-01 (protein)
Unique Ligands	KDO, MG, PG4

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3HZK \| pdb_00003hzk	Download File View File

Crystal structure of S73-2 antibody in complex with antigen Kdo(2.4)Kdo

Brooks, C.L., Muller-Loennies, S., Borisova, S.N., Brade, L., Kosma, P., Hirama, T., MacKenzie, C.R., Brade, H., Evans, S.V.

(2010) Biochemistry 49: 570-581

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mus musculus
Macromolecule	S73-2 Fab (IgG1k) heavy chain (protein) S73-2 Fab (IgG1k) light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDO

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3HZM \| pdb_00003hzm	Download File View File

Crystal structure of S73-2 antibody in complex with antigen Kdo

Brooks, C.L., Muller-Loennies, S., Borisova, S.N., Brade, L., Kosma, P., Hirama, T., MacKenzie, C.R., Brade, H., Evans, S.V.

(2010) Biochemistry 49: 570-581

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	S73-2 Fab (IgG1k) heavy chain (protein) S73-2 Fab (IgG1k) light chain (protein)
Unique Ligands	KDO, MG, ZN

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3HZV \| pdb_00003hzv	Download File View File

Crystal structure of S73-2 antibody in complex with antigen Kdo(2.8)Kdo(2.4)Kdo

Brooks, C.L., Muller-Loennies, S., Borisova, S.N., Brade, L., Kosma, P., Hirama, T., MacKenzie, C.R., Brade, H., Evans, S.V.

(2010) Biochemistry 49: 570-581

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	S73-2 Fab (IgG1k) heavy chain (protein) S73-2 Fab (IgG1k) light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDO

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3HZY \| pdb_00003hzy	Download File View File

Crystal structure of S73-2 antibody in complex with antigen Kdo(2.4)Kdo(2.4)Kdo

Brooks, C.L., Muller-Loennies, S., Borisova, S.N., Brade, L., Kosma, P., Hirama, T., MacKenzie, C.R., Brade, H., Evans, S.V.

(2010) Biochemistry 49: 570-581

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	S73-2 Fab (IgG1k) heavy chain (protein) S73-2 Fab (IgG1k) light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDO

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3I02 \| pdb_00003i02	Download File View File

Crystal structure of S54-10 antibody in complex with antigen Kdo(2.4)Kdo(2.4)Kdo

Brooks, C.L., Muller-Loennies, S., Borisova, S.N., Brade, L., Kosma, P., Hirama, T., MacKenzie, C.R., Brade, H., Evans, S.V.

(2010) Biochemistry 49: 570-581

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	Immunoglobulin heavy chain (protein) Immunoglobulin light chain (protein)
Unique branched monosaccharides	KDA, KDO

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3IET \| pdb_00003iet	Download File View File

Crystal Structure of 237mAb with antigen

Brooks, C.L., Evans, S.V., Borisova, S.N.

(2010) Proc Natl Acad Sci U S A 107: 10056-10061

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Immunoglobulin heavy chain (IgG2a) (protein) Immunoglobulin light chain (IgG2a) (protein) Podoplanin (protein)
Unique Ligands	A2G, ZN

1 to 25 of 74 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1W5H | pdb_00001w5h

1W5J | pdb_00001w5j

1W5K | pdb_00001w5k

1W5L | pdb_00001w5l

2AKH | pdb_00002akh

2AKI | pdb_00002aki

2R1W | pdb_00002r1w

2R1X | pdb_00002r1x

2R1Y | pdb_00002r1y

2R23 | pdb_00002r23

2R2B | pdb_00002r2b

2R2E | pdb_00002r2e

2R2H | pdb_00002r2h

3BPC | pdb_00003bpc

3DUR | pdb_00003dur

3DUS | pdb_00003dus

3DUU | pdb_00003duu

3DV4 | pdb_00003dv4

3DV6 | pdb_00003dv6

3HZK | pdb_00003hzk

3HZM | pdb_00003hzm

3HZV | pdb_00003hzv

3HZY | pdb_00003hzy

3I02 | pdb_00003i02

3IET | pdb_00003iet