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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Bode, W."

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Search Summary

This query matches 352 Structures.

Refinements

Structure Determination Methodology

experimental (352)

Scientific Name of Source Organism

	Homo sapiens (186)
	Bos taurus (84)
	Hirudo medicinalis (38)
	Sus scrofa (20)
	Astacus astacus (8)
	Bacillus sp. MN-32 (6)
	Rattus norvegicus (6)
	synthetic construct (6)
	Cucurbita maxima (5)
	Bacillus subtilis (4)

More...

Taxonomy

	Eukaryota (336)
	Bacteria (27)
	Eukaryota (eukaryotes) (14)
	other sequences (6)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (341)
	SOLUTION NMR (11)

Polymer Entity Type

Protein (352)

Refinement Resolution (Å)

	1.0 - 1.5 (15)
	1.5 - 2.0 (107)
	2.0 - 2.5 (122)
	2.5 - 3.0 (64)
	3.0 - 3.5 (31)
	3.5 - 4.0 (2)

Release Date

	1975 - 1979 (2)
	1980 - 1984 (20)
	1985 - 1989 (4)
	1990 - 1994 (61)
	1995 - 1999 (90)
	2000 - 2004 (111)
	2005 - 2009 (50)
	2010 - 2014 (5)
	2015 - 2019 (7)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (317)
	Transferases (1)

Membrane Protein Annotation

	mpstruc (2)
	OPM (1)

Symmetry Type

	Asymmetric (321)
	Cyclic (38)
	Dihedral (29)
	Helical (2)

SCOP Classification

	All beta proteins (249)
	Alpha and beta proteins (a+b) (68)
	Small proteins (68)
	Alpha and beta proteins (a/b) (33)
	Artifacts (7)
	All alpha proteins (6)
	Multi-domain proteins (alpha and beta) (5)
	Peptides (1)
	Designed proteins (1)

AllSelected

1 to 25 of 352 Structures

Page 1 of 15

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1A0L \| pdb_00001a0l	Download File View File

HUMAN BETA-TRYPTASE: A RING-LIKE TETRAMER WITH ACTIVE SITES FACING A CENTRAL PORE

Pereira, P.J.B., Bergner, A., Macedo-Ribeiro, S., Huber, R., Matschiner, G., Fritz, H., Sommerhoff, C.P., Bode, W.

(1998) Nature 392: 306-311

Released	1999-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	BETA-TRYPTASE (protein)
Unique Ligands	APA

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1A2C \| pdb_00001a2c	Download File View File

Structure of thrombin inhibited by AERUGINOSIN298-A from a BLUE-GREEN ALGA

Rios-Steiner, J.L., Murakami, M., Tulinsky, A.

(1998) J Am Chem Soc 120: 597

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Hirudo medicinalis Homo sapiens Microcystis aeruginosa
Macromolecule	Aeruginosin 298-A (protein) Hirudin variant-2 (protein) Thrombin heavy chain (protein) Thrombin light chain (protein)
Unique Ligands	NA

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1A5H \| pdb_00001a5h	Download File View File

CATALYTIC DOMAIN OF HUMAN TWO-CHAIN TISSUE PLASMINOGEN ACTIVATOR COMPLEX OF A BIS-BENZAMIDINE

Renatus, M., Bode, W., Stubbs, M.T.

(1997) J Biological Chem 272: 21713-21719

Released	1999-04-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	TISSUE PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	BBA

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1A5I \| pdb_00001a5i	Download File View File

CATALYTIC DOMAIN OF VAMPIRE BAT (DESMODUS ROTUNDUS) SALIVA PLASMINOGEN ACTIVATOR IN COMPLEX WITH EGR-CMK (GLU-GLY-ARG CHLOROMETHYL KETONE)

Renatus, M., Stubbs, M.T., Bode, W.

(1997) Biochemistry 36: 13483-13493

Released	1999-03-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Desmodus rotundus
Macromolecule	PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	0GJ

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1A67 \| pdb_00001a67	Download File View File

CHICKEN EGG WHITE CYSTATIN WILDTYPE, NMR, 16 STRUCTURES

Dieckmann, T., Mitschang, L., Hofmann, M., Kos, J., Turk, V., Auerswald, E.A., Jaenicke, R., Oschkinat, H.

(1993) J Mol Biology 234: 1048-1059

Released	1998-05-27
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	CYSTATIN (protein)

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1A85 \| pdb_00001a85	Download File View File

MMP8 WITH MALONIC AND ASPARAGINE BASED INHIBITOR

Brandstetter, H., Roedern, E.G.V., Grams, F., Engh, R.A.

(1998) Protein Sci 7: 1303-1309

Released	1999-04-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	MMP-8 (protein)
Unique Ligands	0DY, CA, ZN

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1A86 \| pdb_00001a86	Download File View File

MMP8 WITH MALONIC AND ASPARTIC ACID BASED INHIBITOR

Brandstetter, H., Roedern, E.G.V., Grams, F., Engh, R.A.

(1998) Protein Sci 7: 1303-1309

Released	1999-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	MMP-8 (protein)
Unique Ligands	0ZB, CA, ZN

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1A90 \| pdb_00001a90	Download File View File

RECOMBINANT MUTANT CHICKEN EGG WHITE CYSTATIN, NMR, 31 STRUCTURES

Dieckmann, T., Mitschang, L., Hofmann, M., Kos, J., Turk, V., Auerswald, E.A., Jaenicke, R., Oschkinat, H.

(1993) J Mol Biology 234: 1048-1059

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	CYSTATIN (protein)

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1ABI \| pdb_00001abi	Download File View File

STRUCTURE OF THE HIRULOG 3-THROMBIN COMPLEX AND NATURE OF THE S' SUBSITES OF SUBSTRATES AND INHIBITORS

Qiu, X., Tulinsky, A.

(1992) Biochemistry 31: 11689-11697

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRULOG 3 (protein)

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1ABJ \| pdb_00001abj	Download File View File

STRUCTURE OF THE HIRULOG 3-THROMBIN COMPLEX AND NATURE OF THE S' SUBSITES OF SUBSTRATES AND INHIBITORS

Qiu, X., Tulinsky, A.

(1992) Biochemistry 31: 11689-11697

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein)
Unique Ligands	0G6

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1ADZ \| pdb_00001adz	Download File View File

THE SOLUTION STRUCTURE OF THE SECOND KUNITZ DOMAIN OF TISSUE FACTOR PATHWAY INHIBITOR, NMR, 30 STRUCTURES

Burgering, M.J.M., Orbons, L.P.M.

(1997) J Mol Biology 269: 395-407

Released	1998-02-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TISSUE FACTOR PATHWAY INHIBITOR (protein)

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1AI8 \| pdb_00001ai8	Download File View File

HUMAN ALPHA-THROMBIN TERNARY COMPLEX WITH THE EXOSITE INHIBITOR HIRUGEN AND ACTIVE SITE INHIBITOR PHCH2OCO-D-DPA-PRO-BOROMPG

Skordalakes, E., Dodson, G., Elgendy, S., Goodwin, C.A., Green, D., Tyrrel, R., Scully, M.F., Freyssinet, J., Kakkar, V.V., Deadman, J.

(1992) Protein Sci 1: 426-471

Released	1997-10-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUDIN IIIB (protein)
Unique Ligands	T42

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1AIX \| pdb_00001aix	Download File View File

HUMAN ALPHA-THROMBIN TERNARY COMPLEX WITH EXOSITE INHIBITOR HIRUGEN AND ACTIVE SITE INHIBITOR PHCH2OCO-D-DPA-PRO-BOROVAL

Skordalakes, E., Dodson, G., Elgendy, S., Goodwin, C.A., Green, D., Tyrrel, R., Scully, M.F., Freyssinet, J., Kakkar, V.V., Deadman, J.

(1992) Protein Sci 1: 426-471

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUGEN (protein)
Unique Ligands	T19

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1AMH \| pdb_00001amh	Download File View File

UNCOMPLEXED RAT TRYPSIN MUTANT WITH ASP 189 REPLACED WITH SER (D189S)

Szabo, E., Bocskei, Z.S., Naray-Szabo, G., Graf, L.

(1999) Eur J Biochem 263: 20-26

Released	1997-12-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus rattus
Macromolecule	ANIONIC TRYPSIN (protein)
Unique Ligands	CA

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1AOC \| pdb_00001aoc	Download File View File

JAPANESE HORSESHOE CRAB COAGULOGEN

Bergner, A., Oganessyan, V., Muta, T., Iwanaga, S., Typke, D., Huber, R., Bode, W.

(1996) EMBO J 15: 6789-6797

Released	1997-04-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tachypleus tridentatus
Macromolecule	COAGULOGEN (protein)
Unique Ligands	SO4

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1AST \| pdb_00001ast	Download File View File

STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES

Bode, W., Gomis-Rueth, F.X., Stoecker, W.

(1992) Nature 358: 164-167

Released	1994-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Astacus astacus
Macromolecule	ASTACIN (protein)
Unique Ligands	ZN

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1ATL \| pdb_00001atl	Download File View File

Structural interaction of natural and synthetic inhibitors with the VENOM METALLOPROTEINASE, ATROLYSIN C (FORM-D)

Zhang, D., Botos, I., Gomis-Rueth, F.-X., Doll, R., Blood, C., Njoroge, F.G., Fox, J.W., Bode, W., Meyer, E.F.

(1994) Proc Natl Acad Sci U S A 91: 8447-8451

Released	1995-10-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Crotalus atrox
Macromolecule	Snake venom metalloproteinase atrolysin-D (protein)
Unique Ligands	0QI, CA, ZN

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1AU8 \| pdb_00001au8	Download File View File

HUMAN CATHEPSIN G

Medrano, F.J., Bode, W., Banbula, A., Potempa, J.

To be published

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN G (protein)
Unique Ligands	0H8

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1AUJ \| pdb_00001auj	Download File View File

BOVINE TRYPSIN COMPLEXED TO META-CYANO-BENZYLIC INHIBITOR

Alexander, R., Smallwood, A., Kettner, C.

(1997) Biochemistry 36: 13180-13186

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	CA, PPB

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1AUT \| pdb_00001aut	Download File View File

Human activated protein C

Mather, T., Oganessyan, V., Hof, P., Bode, W., Huber, R., Foundling, S., Esmon, C.

(1996) EMBO J 15: 6822-6831

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ACTIVATED PROTEIN C (protein)
Unique Ligands	0G6

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1AVG \| pdb_00001avg	Download File View File

THROMBIN INHIBITOR FROM TRIATOMA PALLIDIPENNIS

Fuentes-Prior, P., Huber, R., Bode, W.

(1997) Proc Natl Acad Sci U S A 94: 11845-11850

Released	1998-12-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus Meccus pallidipennis
Macromolecule	THROMBIN (protein) TRIABIN (protein)

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1AZ8 \| pdb_00001az8	Download File View File

BOVINE TRYPSIN COMPLEXED TO BIS-PHENYLAMIDINE INHIBITOR

Alexander, R., Smallwood, A.

To be published

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	IN4

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1AZW \| pdb_00001azw	Download File View File

PROLINE IMINOPEPTIDASE FROM XANTHOMONAS CAMPESTRIS PV. CITRI

Medrano, F.J., Alonso, J., Garcia, J.L., Romero, A., Bode, W., Gomis-Ruth, F.X.

(1998) EMBO J 17: 1-9

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Xanthomonas citri
Macromolecule	PROLINE IMINOPEPTIDASE (protein)

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1BBR \| pdb_00001bbr	Download File View File

THE STRUCTURE OF RESIDUES 7-16 OF THE A ALPHA CHAIN OF HUMAN FIBRINOGEN BOUND TO BOVINE THROMBIN AT 2.3 ANGSTROMS RESOLUTION

Martin, P., Edwards, B.

(1992) J Biological Chem 267: 7911-7920

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	EPSILON-THROMBIN (protein) FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR (protein)

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1BDA \| pdb_00001bda	Download File View File

CATALYTIC DOMAIN OF HUMAN SINGLE CHAIN TISSUE PLASMINOGEN ACTIVATOR IN COMPLEX WITH DANSYL-EGR-CMK (DANSYL-GLU-GLY-ARG CHLOROMETHYL KETONE)

Bode, W., Renatus, M., Engh, R.A.

(1997) EMBO J 16: 4797-4805

Released	1999-05-11
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Homo sapiens
Macromolecule	SINGLE CHAIN TISSUE TYPE PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	2Z0

1 to 25 of 352 Structures

Page 1 of 15

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A0L | pdb_00001a0l

1A2C | pdb_00001a2c

1A5H | pdb_00001a5h

1A5I | pdb_00001a5i

1A67 | pdb_00001a67

1A85 | pdb_00001a85

1A86 | pdb_00001a86

1A90 | pdb_00001a90

1ABI | pdb_00001abi

1ABJ | pdb_00001abj

1ADZ | pdb_00001adz

1AI8 | pdb_00001ai8

1AIX | pdb_00001aix

1AMH | pdb_00001amh

1AOC | pdb_00001aoc

1AST | pdb_00001ast

1ATL | pdb_00001atl

1AU8 | pdb_00001au8

1AUJ | pdb_00001auj

1AUT | pdb_00001aut

1AVG | pdb_00001avg

1AZ8 | pdb_00001az8

1AZW | pdb_00001azw

1BBR | pdb_00001bbr

1BDA | pdb_00001bda