RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Blatter, G."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 143 Structures.

Refinements

Structure Determination Methodology

experimental (143)

Scientific Name of Source Organism

	Homo sapiens (59)
	Aliarcobacter butzleri RM4018 (47)
	Arabidopsis thaliana (17)
	Mus musculus (8)
	Rattus norvegicus (7)
	Aequorea victoria (5)
	Aliarcobacter butzleri (3)
	Kluyveromyces lactis NRRL Y-1140 (3)
	Oryza sativa Japonica Group (3)
	synthetic construct (3)

More...

Taxonomy

	Eukaryota (91)
	Bacteria (52)
	Riboviria (6)
	Eukaryota (eukaryotes) (5)
	other sequences (3)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (121)
	ELECTRON MICROSCOPY (22)

Polymer Entity Type

	Protein (143)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (8)
	2.0 - 2.5 (15)
	2.5 - 3.0 (53)
	3.0 - 3.5 (53)
	3.5 - 4.0 (9)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (8)
	2005 - 2009 (25)
	2010 - 2014 (28)
	2015 - 2019 (46)
	2020 - 2024 (34)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (13)
	Hydrolases (12)
	Ligases (1)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (58)
	MemProtMD (42)
	mpstruc (34)
	OPM (21)

Symmetry Type

	Asymmetric (84)
	Cyclic (68)
	Dihedral (2)

SCOP Classification

	All alpha proteins (31)
	Membrane and cell surface proteins and peptides (19)
	Alpha and beta proteins (a+b) (16)
	Artifacts (11)
	Alpha and beta proteins (a/b) (8)
	All beta proteins (5)
	Multi-domain proteins (alpha and beta) (5)
	Small proteins (5)
	Peptides (2)

AllSelected

1 to 25 of 143 Structures

Page 1 of 6

Sort by

Explore in 3D

1CF7 \| pdb_00001cf7	Download File View File

STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP

Zheng, N., Fraenkel, E., Pabo, C.O., Pavletich, N.P.

(1999) Genes Dev 13: 666-674

Released	1999-04-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (TRANSCRIPTION FACTOR DP-2) (protein) PROTEIN (TRANSCRIPTION FACTOR E2F-4) (protein) DNA (5'-D(APTPTPTPTPCPGPCPGPCPGPGPTPTPTPT)-3') (nucleic acid) DNA (5'-D(TPAPAPAPAPCPCPGPCPGPCPGPAPAPAPA)-3') (nucleic acid)

Explore in 3D

1FBV \| pdb_00001fbv	Download File View File

STRUCTURE OF A CBL-UBCH7 COMPLEX: RING DOMAIN FUNCTION IN UBIQUITIN-PROTEIN LIGASES

Zheng, N., Wang, P., Jeffrey, P.D., Pavletich, N.P.

(2000) Cell 102: 533-539

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCTION PROTEIN CBL (protein) UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 (protein) ZAP-70 PEPTIDE (protein)
Unique Ligands	SO4, ZN

Explore in 3D

1IYJ \| pdb_00001iyj	Download File View File

STRUCTURE OF A BRCA2-DSS1 COMPLEX

Pavletich, N.P., Jeffrey, P.D., Yang, H.J.

(2002) Science 297: 1837-1848

Released	2002-10-02
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Deleted in split hand/split foot protein 1 (protein) breast cancer susceptibility (protein)

Explore in 3D

1LDD \| pdb_00001ldd	Download File View File

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex

Zheng, N., Schulman, B.A., Song, L., Miller, J.J., Jeffrey, P.D., Wang, P., Chu, C., Koepp, D.M., Elledge, S.J., Pagano, M., Conaway, R.C., Conaway, J.W., Harper, J.W., Pavletich, N.P.

(2002) Nature 416: 703-709

Released	2002-05-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Anaphase Promoting Complex (protein)

Explore in 3D

1LDJ \| pdb_00001ldj	Download File View File

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex

Zheng, N., Schulman, B.A., Song, L., Miller, J.J., Jeffrey, P.D., Wang, P., Chu, C., Koepp, D.M., Elledge, S.J., Pagano, M., Conaway, R.C., Conaway, J.W., Harper, J.W., Pavletich, N.P.

(2002) Nature 416: 703-709

Released	2002-05-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Cullin homolog 1 (protein) ring-box protein 1 (protein)
Unique Ligands	ZN

Explore in 3D

1LDK \| pdb_00001ldk	Download File View File

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex

Zheng, N., Schulman, B.A., Song, L., Miller, J.J., Jeffrey, P.D., Wang, P., Chu, C., Koepp, D.M., Elledge, S.J., Pagano, M., Conaway, R.C., Conaway, J.W., Harper, J.W., Pavletich, N.P.

(2002) Nature 416: 703-709

Released	2002-05-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	CULLIN HOMOLOG (protein) CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 (protein) SKP2-like protein type gamma (protein) ring-box protein 1 (protein)
Unique Ligands	ZN

Explore in 3D

1MIU \| pdb_00001miu	Download File View File

Structure of a BRCA2-DSS1 complex

Yang, H., Jeffrey, P.D., Miller, J., Kinnucan, E., Sun, Y., Thoma, N.H., Zheng, N., Chen, P.L., Lee, W.H., Pavletich, N.P.

(2002) Science 297: 1837-1848

Released	2002-09-25
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Breast Cancer type 2 susceptibility protein (protein) Deleted in split hand/split foot protein 1 (protein)
Unique Ligands	HG

Explore in 3D

1MJE \| pdb_00001mje	Download File View File

STRUCTURE OF A BRCA2-DSS1-SSDNA COMPLEX

Yang, H., Jeffrey, P.D., Miller, J., Kinnucan, E., Sun, Y., Thoma, N.H., Zheng, N., Chen, P.L., Lee, W.H., Pavletich, N.P.

(2002) Science 297: 1837-1848

Released	2002-09-27
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Deleted in split hand/split foot protein 1 (protein) breast cancer 2 (protein) 5'-D(PTPTPTPTPTPT)-3' (nucleic acid)

Explore in 3D

1U6G \| pdb_00001u6g	Download File View File

Crystal Structure of The Cand1-Cul1-Roc1 Complex

Goldenberg, S.J., Shumway, S.D., Cascio, T.C., Garbutt, K.C., Liu, J., Xiong, Y., Zheng, N.

(2004) Cell 119: 517-528

Released	2004-12-14
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Cullin homolog 1 (protein) RING-box protein 1 (protein) TIP120 protein (protein)
Unique Ligands	ZN

Explore in 3D

1YKD \| pdb_00001ykd	Download File View File

Crystal Structure of the Tandem GAF Domains from a Cyanobacterial Adenylyl Cyclase: Novel Modes of Ligand-Binding and Dimerization

Martinez, S.E., Bruder, S., Schultz, A., Zheng, N., Schultz, J.E., Beavo, J.A., Linder, J.U.

(2005) Proc Natl Acad Sci U S A 102: 3082-3087

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Anabaena sp.
Macromolecule	adenylate cyclase (protein)
Unique Ligands	CMP

Explore in 3D

2ASS \| pdb_00002ass	Download File View File

Crystal structure of the Skp1-Skp2-Cks1 complex

Hao, B., Zhang, N., Schulman, B.A., Wu, G., Pagano, M., Pavletich, N.P.

(2005) Mol Cell 20: 9-19

Released	2005-10-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinases regulatory subunit 1 (protein) S-phase kinase-associated protein 1A (protein) S-phase kinase-associated protein 2 (protein)
Unique Ligands	BEN, PO4

Explore in 3D

2AST \| pdb_00002ast	Download File View File

Crystal structure of Skp1-Skp2-Cks1 in complex with a p27 peptide

Hao, B., Zhang, N., Schulman, B.A., Wu, G., Pagano, M., Pavletich, N.P.

(2005) Mol Cell 20: 9-19

Released	2005-10-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase inhibitor 1B (protein) Cyclin-dependent kinases regulatory subunit 1 (protein) S-phase kinase-associated protein 1A (protein) S-phase kinase-associated protein 2 (protein)
Unique Ligands	BEN

Explore in 3D

2AZE \| pdb_00002aze	Download File View File

Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer

Rubin, S.M., Gall, A.L., Zheng, N., Pavletich, N.P.

(2005) Cell 123: 1093-1106

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Retinoblastoma-associated protein (protein) Transcription factor Dp-1 (protein) Transcription factor E2F1 (protein)

Explore in 3D

2B5L \| pdb_00002b5l	Download File View File

Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein

Li, T., Chen, X., Garbutt, K.C., Zhou, P., Zheng, N.

(2006) Cell 124: 105-117

Released	2006-02-28
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens Mammalian orthorubulavirus 5
Macromolecule	Nonstructural protein V (protein) damage-specific DNA binding protein 1 (protein)
Unique Ligands	ZN

Explore in 3D

2B5M \| pdb_00002b5m	Download File View File

Crystal Structure of DDB1

Li, T., Chen, X., Garbutt, K.C., Zhou, P., Zheng, N.

(2006) Cell 124: 105-117

Released	2006-02-28
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Homo sapiens
Macromolecule	damage-specific DNA binding protein 1 (protein)

Explore in 3D

2B5N \| pdb_00002b5n	Download File View File

Crystal Structure of the DDB1 BPB Domain

Li, T., Chen, X., Garbutt, K.C., Zhou, P., Zheng, N.

(2006) Cell 124: 105-117

Released	2006-02-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	damage-specific DNA binding protein 1 (protein)
Unique Ligands	IPA

Explore in 3D

2HYE \| pdb_00002hye	Download File View File

Crystal Structure of the DDB1-Cul4A-Rbx1-SV5V Complex

Angers, S., Li, T., Yi, X., MacCoss, M.J., Moon, R.T., Zheng, N.

(2006) Nature 443: 590-593

Released	2006-10-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Mammalian orthorubulavirus 5
Macromolecule	Cullin-4A (protein) DNA damage-binding protein 1 (protein) Nonstructural protein V (protein) RING-box protein 1 (protein)
Unique Ligands	ZN

Explore in 3D

2P1M \| pdb_00002p1m	Download File View File

TIR1-ASK1 complex structure

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	IHP

Explore in 3D

2P1N \| pdb_00002p1n	Download File View File

Mechanism of Auxin Perception by the TIR1 Ubiqutin Ligase

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, C., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin-responsive protein IAA7 (protein) SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	CFA, IHP

Explore in 3D

2P1O \| pdb_00002p1o	Download File View File

Mechanism of Auxin Perception by the TIR1 ubiquitin ligase

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin-responsive protein IAA7 (protein) SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	IHP, NLA

Explore in 3D

2P1P \| pdb_00002p1p	Download File View File

Mechanism of Auxin Perception by the TIR1 ubiquitin ligase

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	IAC, IHP

Explore in 3D

2P1Q \| pdb_00002p1q	Download File View File

Mechanism of Auxin Perception by the TIR1 ubiquitin ligase

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin-responsive protein IAA7 (protein) SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	IAC, IHP

Explore in 3D

3C6N \| pdb_00003c6n	Download File View File

Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling

Tan, X., Zheng, N., Hayashi, K.

(2008) Proc Natl Acad Sci U S A 105: 5632-5637

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 (protein)
Unique Ligands	2S8, IHP

Explore in 3D

3C6O \| pdb_00003c6o	Download File View File

Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling

Tan, X.

(2008) Proc Natl Acad Sci U S A 105: 5632-5637

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 (protein)
Unique Ligands	2S2, IHP

Explore in 3D

3C6P \| pdb_00003c6p	Download File View File

Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling

Tan, X.

(2008) Proc Natl Acad Sci U S A 105: 5632-5637

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 (protein)
Unique Ligands	2S3, IHP

1 to 25 of 143 Structures

Page 1 of 6

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CF7 | pdb_00001cf7

1FBV | pdb_00001fbv

1IYJ | pdb_00001iyj

1LDD | pdb_00001ldd

1LDJ | pdb_00001ldj

1LDK | pdb_00001ldk

1MIU | pdb_00001miu

1MJE | pdb_00001mje

1U6G | pdb_00001u6g

1YKD | pdb_00001ykd

2ASS | pdb_00002ass

2AST | pdb_00002ast

2AZE | pdb_00002aze

2B5L | pdb_00002b5l

2B5M | pdb_00002b5m

2B5N | pdb_00002b5n

2HYE | pdb_00002hye

2P1M | pdb_00002p1m

2P1N | pdb_00002p1n

2P1O | pdb_00002p1o

2P1P | pdb_00002p1p

2P1Q | pdb_00002p1q

3C6N | pdb_00003c6n

3C6O | pdb_00003c6o

3C6P | pdb_00003c6p