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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Benvenuti, M."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Streptomyces seoulensis (5)
	Bos taurus (4)
	Erwinia amylovora CFBP1430 (3)
	Escherichia coli (3)
	Homo sapiens (2)
	Saccharomyces cerevisiae (2)
	Erwinia amylovora ATCC 49946 (1)
	Human immunodeficiency virus 1 (1)

Taxonomy

	Bacteria (12)
	Eukaryota (8)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (21)

Polymer Entity Type

Protein (21)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (11)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (9)
	2010 - 2014 (2)
	2015 - 2019 (4)

Enzyme Classification Name

	Transferases (6)
	Oxidoreductases (5)
	Hydrolases (1)

Symmetry Type

	Asymmetric (9)
	Dihedral (6)
	Cyclic (7)

SCOP Classification

	All alpha proteins (5)
	Alpha and beta proteins (a/b) (3)
	All beta proteins (2)

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1 to 21 of 21 Structures

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1G1C \| pdb_00001g1c	Download File View File

I1 DOMAIN FROM TITIN

Mayans, O., Wuerges, J., Gautel, M., Wilmanns, M.

(2001) Structure 9: 331-340

Released	2001-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN-LIKE DOMAIN I1 FROM TITIN (protein)

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1Q0D \| pdb_00001q0d	Download File View File

Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the oxidized state

Wuerges, J., Lee, J.-W., Yim, Y.-I., Yim, H.-S., Kang, S.-O., Djinovic Carugo, K.

(2004) Proc Natl Acad Sci U S A 101: 8569-8574

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces seoulensis
Macromolecule	Superoxide dismutase [Ni] (protein)
Unique Ligands	3NI, SO4

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1Q0F \| pdb_00001q0f	Download File View File

Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after partial x-ray-induced reduction

Wuerges, J., Lee, J.-W., Yim, Y.-I., Yim, H.-S., Kang, S.-O., Djinovic Carugo, K.

(2004) Proc Natl Acad Sci U S A 101: 8569-8574

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces seoulensis
Macromolecule	Superoxide dismutase [Ni] (protein)
Unique Ligands	3NI, SO4

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1Q0G \| pdb_00001q0g	Download File View File

Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after full x-ray-induced reduction

Wuerges, J., Lee, J.-W., Yim, Y.-I., Yim, H.-S., Kang, S.-O., Djinovic Carugo, K.

(2004) Proc Natl Acad Sci U S A 101: 8569-8574

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces seoulensis
Macromolecule	Superoxide dismutase [Ni] (protein)
Unique Ligands	NI, SO4

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1Q0K \| pdb_00001q0k	Download File View File

Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the thiosulfate-reduced state

Wuerges, J., Lee, J.-W., Yim, Y.-I., Yim, H.-S., Kang, S.-O., Djinovic Carugo, K.

(2004) Proc Natl Acad Sci U S A 101: 8569-8574

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces seoulensis
Macromolecule	Superoxide dismutase [Ni] (protein)
Unique Ligands	NI, SO4, THJ

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1Q0M \| pdb_00001q0m	Download File View File

Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after full x-ray-induced reduction

Wuerges, J., Lee, J.-W., Yim, Y.-I., Yim, H.-S., Kang, S.-O., Djinovic Carugo, K.

(2004) Proc Natl Acad Sci U S A 101: 8569-8574

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Streptomyces seoulensis
Macromolecule	Superoxide dismutase [Ni] (protein)
Unique Ligands	ACY, NI, SO4

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2A1E \| pdb_00002a1e	Download File View File

High resolution structure of HIV-1 PR with TS-126

Demitri, N., Geremia, S., Randaccio, L., Wuerges, J., Benedetti, F., Berti, F., Dinon, F., Campaner, P., Tell, G.

(2006) ChemMedChem 1: 186-188

Released	2006-02-21
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Pol polyprotein (protein)
Unique Ligands	ACT, CL, DMS, GOL, IPF, NA

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2AV6 \| pdb_00002av6	Download File View File

X-Ray studies on maltodextrin phosphorylase complexes: recognition of substrates and cathalitic mechanism of phosphorylase family

Geremia, S., Campagnolo, M.

(2008) Arch Biochem Biophys 471: 11-19

Released	2005-09-06
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Escherichia coli
Macromolecule	Maltodextrin phosphorylase (protein)
Unique Ligands	NO3, PLP
Unique branched monosaccharides	BGC, GLC

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2AW3 \| pdb_00002aw3	Download File View File

X-Ray studies on maltodextrin phosphorylase complexes: recognition of substrates and cathalitic mechanism of phosphorylase family

Geremia, S., Campagnolo, M.

(2008) Arch Biochem Biophys 471: 11-19

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Maltodextrin phosphorylase (protein)
Unique Ligands	PLP, SO4
Unique branched monosaccharides	BGC, GLC

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2AZD \| pdb_00002azd	Download File View File

X-Ray studies on Maltodextrin Phosphorylase (MalP) Complexes: recognition of substrates and CATALYTIC mechanism of phosphorylase family

Geremia, S., Campagnolo, M.

(2008) Arch Biochem Biophys 471: 11-19

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Escherichia coli
Macromolecule	Maltodextrin phosphorylase (protein)
Unique Ligands	PLP, TRS, VO4
Unique branched monosaccharides	BGC, GLC

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2BB5 \| pdb_00002bb5	Download File View File

Structure of Human Transcobalamin in complex with Cobalamin

Wuerges, J., Garau, G., Geremia, S., Fedosov, S.N., Petersen, T.E., Randaccio, L.

(2006) Proc Natl Acad Sci U S A 103: 4386-4391

Released	2006-04-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Transcobalamin II (protein)
Unique Ligands	B12

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2BB6 \| pdb_00002bb6	Download File View File

Structure of Cobalamin-complexed Bovine Transcobalamin in Monoclinic Crystal Form

Wuerges, J., Garau, G., Geremia, S., Fedosov, S.N., Petersen, T.E., Randaccio, L.

(2006) Proc Natl Acad Sci U S A 103: 4386-4391

Released	2006-04-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	Transcobalamin II (protein)
Unique Ligands	B12, CL

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2BBC \| pdb_00002bbc	Download File View File

Structure of Cobalamin-complexed Bovine Transcobalamin in trigonal crystal form

Wuerges, J., Garau, G., Geremia, S., Fedosov, S.N., Petersen, T.E., Randaccio, L.

(2006) Proc Natl Acad Sci U S A 103: 4386-4391

Released	2006-04-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	Transcobalamin II (protein)
Unique Ligands	B12, CL

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2V3N \| pdb_00002v3n	Download File View File

Crystallographic analysis of upper axial ligand substitutions in cobalamin bound to transcobalamin

Wuerges, J., Geremia, S., Randaccio, L.

(2007) IUBMB Life 59: 722

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Bos taurus
Macromolecule	TRANSCOBALAMIN-2 (protein)
Unique Ligands	B12, CL, CYN

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2V3P \| pdb_00002v3p	Download File View File

Crystallographic analysis of beta-axial ligand substitutions in cobalamin bound to transcobalamin

Wuerges, J., Geremia, S., Randaccio, L.

(2007) IUBMB Life 59: 722

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bos taurus
Macromolecule	TRANSCOBALAMIN-2 (protein)
Unique Ligands	B12, CL, SO3

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4AM6 \| pdb_00004am6	Download File View File

C-TERMINAL DOMAIN OF ACTIN-RELATED PROTEIN ARP8 FROM S. CEREVISIAE

Wuerges, J., Saravanan, M., Bose, D., Cook, N.J., Zhang, X., Wigley, D.B.

(2012) Proc Natl Acad Sci U S A 109: 20883

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ACTIN-LIKE PROTEIN ARP8 (protein)
Unique Ligands	SO4

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4AM7 \| pdb_00004am7	Download File View File

ADP-BOUND C-TERMINAL DOMAIN OF ACTIN-RELATED PROTEIN ARP8 FROM S. CEREVISIAE

Wuerges, J., Saravanan, M., Bose, D., Cook, N.J., Zhang, X., Wigley, D.B.

(2012) Proc Natl Acad Sci U S A 109: 20883

Released	2012-12-12
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ACTIN-LIKE PROTEIN ARP8 (protein)
Unique Ligands	ADP

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4D47 \| pdb_00004d47	Download File View File

X-ray structure of the levansucrase from Erwinia amylovora

Wuerges, J., Caputi, L., Cianci, M., Benini, S.

(2015) J Struct Biol 191: 290

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Erwinia amylovora ATCC 49946
Macromolecule	LEVANSUCRASE (protein)
Unique Ligands	FRU, GLC

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4D48 \| pdb_00004d48	Download File View File

Crystal Structure of glucose-1-phosphate uridylyltransferase GalU from Erwinia amylovora.

Toccafondi, M., Wuerges, J., Cianci, M., Benini, S.

(2017) Biochim Biophys Acta 1865: 1348-1357

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Erwinia amylovora CFBP1430
Macromolecule	GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (protein)

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5FR7 \| pdb_00005fr7	Download File View File

Erwinia amylovora AmyR amylovoran repressor, a member of the YbjN protein family

Bartho, J.D., Bellini, D., Wuerges, J., Demitri, N., Walsh, M., Benini, S.

(2017) PLoS One 12: e0176049-e0176049

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Erwinia amylovora CFBP1430
Macromolecule	AMYR (protein)

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5FRK \| pdb_00005frk	Download File View File

SeMet crystal structure of Erwinia amylovora AmyR amylovoran repressor, a member of the YbjN protein family

Bartho, J.D., Bellini, D., Wuerges, J., Demitri, N., Walsh, M., Benini, S.

(2017) PLoS One 12: e0176049-e0176049

Released	2017-02-15
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Erwinia amylovora CFBP1430
Macromolecule	AMYR (protein)

1 to 21 of 21 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1G1C | pdb_00001g1c

1Q0D | pdb_00001q0d

1Q0F | pdb_00001q0f

1Q0G | pdb_00001q0g

1Q0K | pdb_00001q0k

1Q0M | pdb_00001q0m

2A1E | pdb_00002a1e

2AV6 | pdb_00002av6

2AW3 | pdb_00002aw3

2AZD | pdb_00002azd

2BB5 | pdb_00002bb5

2BB6 | pdb_00002bb6

2BBC | pdb_00002bbc

2V3N | pdb_00002v3n

2V3P | pdb_00002v3p

4AM6 | pdb_00004am6

4AM7 | pdb_00004am7

4D47 | pdb_00004d47

4D48 | pdb_00004d48

5FR7 | pdb_00005fr7

5FRK | pdb_00005frk