RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Structure 2 Function Project (S2F)"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Haemophilus influenzae (28)
	Escherichia coli (13)
	Haemophilus influenzae Rd KW20 (8)
	Escherichia coli O157:H7 (2)
	Bradyrhizobium elkanii (1)
	Escherichia coli K-12 (1)
	Homo sapiens (1)
	Pseudomonas aeruginosa (1)
	Pseudomonas aeruginosa PAO1 (1)
	synthetic construct (1)

Taxonomy

	Bacteria (53)
	Eukaryota (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (47)
	SOLUTION NMR (7)

Polymer Entity Type

Protein (54)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (4)
	1.5 - 2.0 (18)
	2.0 - 2.5 (19)
	2.5 - 3.0 (5)

Release Date

	2000 - 2004 (43)
	2005 - 2009 (9)
	2010 - 2014 (2)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (5)
	Lyases (5)
	Ligases (1)
	Isomerases (1)

Symmetry Type

	Asymmetric (28)
	Cyclic (25)
	Dihedral (8)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (21)
	Alpha and beta proteins (a+b) (25)
	All alpha proteins (5)
	All beta proteins (6)
	Artifacts (5)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 54 Structures

Page 1 of 3

Sort by

Explore in 3D

1DBU \| pdb_00001dbu	Download File View File

Crystal structure of cysteinyl-tRNA(Pro) deacylase protein from H. influenzae (HI1434)

Zhang, H., Huang, K., Li, Z., Herzberg, O., Structure 2 Function Project (S2F)

(2000) Proteins 40: 86-97

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	cysteinyl-tRNA(Pro) deacylase (protein)
Unique Ligands	HG

Explore in 3D

1DBX \| pdb_00001dbx	Download File View File

Crystal structure of cysteinyl-tRNA(Pro) deacylase from H. influenzae (HI1434)

Zhang, H., Huang, K., Li, Z., Herzberg, O., Structure 2 Function Project (S2F)

(2000) Proteins 40: 86-97

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	cysteinyl-tRNA(Pro) deacylase (protein)

Explore in 3D

1FL9 \| pdb_00001fl9	Download File View File

THE YJEE PROTEIN

Teplyakov, A., Gilliland, G.L., Structure 2 Function Project (S2F)

(2002) Proteins 48: 220-226

Released	2002-08-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0065 (protein)
Unique Ligands	HG

Explore in 3D

1HTW \| pdb_00001htw	Download File View File

COMPLEX OF HI0065 WITH ADP AND MAGNESIUM

Teplyakov, A., Gilliland, G.L., Structure 2 Function Project (S2F)

(2002) Proteins 48: 220-226

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Haemophilus influenzae
Macromolecule	HI0065 (protein)
Unique Ligands	ACT, ADP, MG, NA

Explore in 3D

1IM8 \| pdb_00001im8	Download File View File

Crystal structure of YecO from Haemophilus influenzae (HI0319), a methyltransferase with a bound S-adenosylhomocysteine

Lim, K., Zhang, H., Tempczyk, A., Bonander, N., Toedt, J., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2001) Proteins 45: 397-407

Released	2001-11-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	YecO (protein)
Unique Ligands	CL, SAI

Explore in 3D

1IMU \| pdb_00001imu	Download File View File

Solution Structure of HI0257, a Ribosome Binding Protein

Parsons, L., Eisenstein, E., Orban, J., Structure 2 Function Project (S2F)

(2001) Biochemistry 40: 10979-10986

Released	2001-10-03
Method	SOLUTION NMR
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0257 (protein)

Explore in 3D

1IN0 \| pdb_00001in0	Download File View File

YAJQ PROTEIN (HI1034)

Teplyakov, A., Gilliland, G.L., Structure 2 Function Project (S2F)

(2003) J Struct Funct Genomics 4: 1-9

Released	2003-06-10
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Haemophilus influenzae
Macromolecule	YAJQ PROTEIN (protein)
Unique Ligands	HG, MMC, NA

Explore in 3D

1IZM \| pdb_00001izm	Download File View File

Structure of ygfB from Haemophilus influenzae (HI0817), a Conserved Hypothetical Protein

Galkin, A., Sarikaya, E., Lehmann, C., Howard, A., Herzberg, O., Structure 2 Function Project (S2F)

(2004) Proteins 57: 874-877

Released	2003-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0817 (protein)

Explore in 3D

1J7G \| pdb_00001j7g	Download File View File

Structure of YihZ from Haemophilus influenzae (HI0670), a D-Tyr-tRNA(Tyr) deacylase

Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2003) J Biological Chem 278: 13496-13502

Released	2003-04-22
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	D-tyrosyl-tRNA(Tyr) deacylase (protein)

Explore in 3D

1J7H \| pdb_00001j7h	Download File View File

Solution Structure of HI0719, a Hypothetical Protein From Haemophilus Influenzae

Parsons, L., Bonander, N., Eisenstein, E., Gilson, M., Kairys, V., Orban, J., Structure 2 Function Project (S2F)

(2003) Biochemistry 42: 80-89

Released	2003-02-11
Method	SOLUTION NMR
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0719 (protein)

Explore in 3D

1J85 \| pdb_00001j85	Download File View File

Structure of YibK from Haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA (guanosine-2'-O-) methyltransferase (SpoU)

Lim, K., Zhang, H., Toedt, J., Tempcyzk, A., Krajewski, W., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2003) Proteins 51: 56-67

Released	2003-02-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	YibK (protein)

Explore in 3D

1J8B \| pdb_00001j8b	Download File View File

Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function

Lim, K., Tempcyzk, A., Toedt, J., Parsons, J.F., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2003) Proteins 50: 375-379

Released	2003-01-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	YbaB (protein)

Explore in 3D

1J8D \| pdb_00001j8d	Download File View File

Structure Of the metal-free form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)

Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 46: 393-404

Released	2002-02-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	deoxy-D-mannose-octulosonate 8-phosphate phosphatase (protein)
Unique Ligands	GOL

Explore in 3D

1J9A \| pdb_00001j9a	Download File View File

OLIGORIBONUCLEASE

Bonander, N., Tordova, M., Ladner, J.E., Eisenstein, E., Gilliland, G.L., Structure 2 Function Project (S2F)

To be published

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Haemophilus influenzae
Macromolecule	OLIGORIBONUCLEASE (protein)
Unique Ligands	SO4

Explore in 3D

1JAL \| pdb_00001jal	Download File View File

YCHF PROTEIN (HI0393)

Teplyakov, A., Gilliland, G.L., Structure 2 Function Project (S2F)

(2003) J Bacteriol 185: 4031-4037

Released	2003-03-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Haemophilus influenzae
Macromolecule	YchF protein (protein)

Explore in 3D

1JJV \| pdb_00001jjv	Download File View File

DEPHOSPHO-COA KINASE IN COMPLEX WITH ATP

Obmolova, G., Teplyakov, A., Bonander, N., Eisenstein, E., Howard, A.J., Gilliland, G.L., Structure 2 Function Project (S2F)

(2001) J Struct Biol 136: 119-125

Released	2002-05-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Haemophilus influenzae
Macromolecule	DEPHOSPHO-COA KINASE (protein)
Unique Ligands	ATP, HG, SO4

Explore in 3D

1JN1 \| pdb_00001jn1	Download File View File

Structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Haemophilus influenzae (HI0671)

Lehmann, C., Lim, K., Toedt, J., Krajewski, W., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 49: 135-138

Released	2002-08-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Haemophilus influenzae
Macromolecule	2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE (protein)
Unique Ligands	CO, SO4

Explore in 3D

1JO0 \| pdb_00001jo0	Download File View File

Structure of HI1333, a Hypothetical Protein from Haemophilus influenzae with Structural Similarity to RNA-binding Proteins

Willis, M.A., Krajewski, W., Chalamasetty, V.R., Reddy, P., Howard, A., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 49: 423-426

Released	2002-11-20
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI1333 (protein)
Unique Ligands	GOL

Explore in 3D

1JOE \| pdb_00001joe	Download File View File

Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae

Chen, C.C.H., Parsons, J.F., Lim, K., Lehmann, C., Tempczyk, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

To be published

Released	2001-08-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN (protein)
Unique Ligands	HG, ZN

Explore in 3D

1JOG \| pdb_00001jog	Download File View File

Structure of HI0074 from Heamophilus Influenzae reveals the fold of a substrate binding domain of a nucleotidyltransferase

Lehmann, C., Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2003) Proteins 50: 249-260

Released	2002-12-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0074 (protein)

Explore in 3D

1JOP \| pdb_00001jop	Download File View File

YHCH protein (HI0227)

Teplyakov, A., Obmolova, G., Gilliland, G.L., Structure 2 Function Project (S2F)

(2005) J Bacteriol 187: 5520-5527

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Haemophilus influenzae
Macromolecule	Yhch protein (protein)
Unique Ligands	HG

Explore in 3D

1JOS \| pdb_00001jos	Download File View File

Ribosome Binding Factor A(rbfA)

Bonander, N., Tordova, M., Howard, A.J., Eisenstein, E., Gilliland, G.L., Structure 2 Function Project (S2F)

To be published

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Haemophilus influenzae
Macromolecule	RIBOSOME-BINDING FACTOR A (protein)

Explore in 3D

1JOV \| pdb_00001jov	Download File View File

Crystal Structure Analysis of HI1317

Bonander, N., Tordova, M., Howard, A.J., Eisenstein, E., Gilliland, G., Structure 2 Function Project (S2F)

To be published

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Haemophilus influenzae
Macromolecule	HI1317 (protein)
Unique Ligands	SO4, TRS

Explore in 3D

1K1E \| pdb_00001k1e	Download File View File

Structure Of the cobalt-bound form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)

Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 46: 393-404

Released	2002-02-27
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	deoxy-D-mannose-octulosonate 8-phosphate phosphatase (protein)
Unique Ligands	CO, GOL, HG, MES, SO4