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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Martynowski, D."

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This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (5)
	Betapolyomavirus macacae (3)
	Pseudomonas fluorescens (2)
	Bacillus anthracis (1)
	Francisella tularensis subsp. holarctica LVS (1)
	Thermotoga maritima (1)

Taxonomy

	Bacteria (5)
	Eukaryota (5)
	Monodnaviria (3)
	Eukaryota (eukaryotes) (2)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

	Protein (13)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (7)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (10)
	2010 - 2014 (3)

Enzyme Classification Name

	Transferases (3)
	Isomerases (3)
	Lyases (2)
	Ligases (1)

Symmetry Type

	Cyclic (7)
	Asymmetric (6)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	All alpha proteins (4)
	Alpha and beta proteins (a+b) (3)
	Artifacts (1)

AllSelected

1 to 13 of 13 Structures

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2GTD \| pdb_00002gtd	Download File View File

Crystal Structure of a Type III Pantothenate Kinase: Insight into the Catalysis of an Essential Coenzyme A Biosynthetic Enzyme Universally Distributed in Bacteria

Yang, K., Eyobo, Y., Brand, A.L., Martynowski, D., Tomchick, D.

(2006) J Bacteriol 188: 5532-5540

Released	2006-08-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	Type III Pantothenate Kinase (protein)

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2HBV \| pdb_00002hbv	Download File View File

Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)

Martynowski, D., Eyobo, Y., Li, T., Yang, K., Liu, A., Zhang, H.

(2006) Biochemistry 45: 10412-10421

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-amino-3-carboxymuconate 6-semialdehyde decarboxylase (protein)
Unique Ligands	MG, ZN

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2HBX \| pdb_00002hbx	Download File View File

Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)

Martynowski, D., Eyobo, Y., Li, T., Yang, K., Liu, A., Zhang, H.

(2006) Biochemistry 45: 10412-10421

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-amino-3-carboxymuconate 6-semialdehyde decarboxylase (protein)
Unique Ligands	CO

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2IPR \| pdb_00002ipr	Download File View File

Origin binding domain of the SV40 large T antigen (residues 131-259). P21 crystal form

Martynowski, D., Bochkareva, E., Bochkarev, A.

(2006) EMBO J 25: 5961-5969

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein)

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2ITJ \| pdb_00002itj	Download File View File

Origin binding domain of the SV40 large T antigen (residues 131-259). P212121 crystal form

Martynowski, D., Bochkareva, E., Bochkarev, A.

(2006) EMBO J 25: 5961-5969

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein)

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2NL8 \| pdb_00002nl8	Download File View File

The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)

Martynowski, D., Bochkareva, E., Bochkarev, A.

(2006) EMBO J 25: 5961-5969

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein) 18-nt PEN element of the SV40 DNA origin (nucleic acid)

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3CS8 \| pdb_00003cs8	Download File View File

Structural and Biochemical Basis for the Binding Selectivity of PPARg to PGC-1a

Li, Y., Martynowski, D.

(2008) J Biological Chem 283: 19132-19139

Released	2008-06-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	PGC-1alfa peptide (protein) Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	BRL, SO4

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3CWD \| pdb_00003cwd	Download File View File

Molecular recognition of nitro-fatty acids by PPAR gamma

Martynowski, D., Li, Y.

(2008) Nat Struct Mol Biol 15: 865-867

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein) SRC1-2 PEPTIDE (protein)
Unique Ligands	LNA, LNB

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3E27 \| pdb_00003e27	Download File View File

Nicotinic acid mononucleotide (NaMN) adenylyltransferase from Bacillus anthracis: product complex

Martynowski, D., Eyobo, Y., Zhang, H.

(2009) Chem Biol 16: 849-861

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus anthracis
Macromolecule	Nicotinate (Nicotinamide) nucleotide adenylyltransferase (protein)
Unique Ligands	DND, MG

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3FIU \| pdb_00003fiu	Download File View File

Structure of NMN synthetase from Francisella tularensis

Sorci, L., Martynowski, D., Eyobo, Y., Osterman, A.L., Zhang, H.

(2009) Proc Natl Acad Sci U S A 106: 3083-3088

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Francisella tularensis subsp. holarctica LVS
Macromolecule	NH(3)-dependent NAD(+) synthetase (protein)
Unique Ligands	AMP, MG, NA, POP

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3KYT \| pdb_00003kyt	Download File View File

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

Martynowski, D., Li, Y.

(2010) Mol Endocrinol 24: 923-929

Released	2010-03-16
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor ROR-gamma (protein) Nuclear receptor coactivator 2 (protein)
Unique Ligands	HC2

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3L0J \| pdb_00003l0j	Download File View File

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

Martynowski, D., Li, Y.

(2010) Mol Endocrinol 24: 923-929

Released	2010-03-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor ROR-gamma (protein) Nuclear receptor coactivator 2 (protein)
Unique Ligands	HC9

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3L0L \| pdb_00003l0l	Download File View File

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

Martynowski, D., Li, Y.

(2010) Mol Endocrinol 24: 923-929

Released	2010-03-16
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor ROR-gamma (protein) SCR2-2 (protein)
Unique Ligands	HC3

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2GTD | pdb_00002gtd

Crystal Structure of a Type III Pantothenate Kinase: Insight into the Catalysis of an Essential Coenzyme A Biosynthetic Enzyme Universally Distributed in Bacteria

2HBV | pdb_00002hbv

Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)

2HBX | pdb_00002hbx

Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)

2IPR | pdb_00002ipr

Origin binding domain of the SV40 large T antigen (residues 131-259). P21 crystal form

2ITJ | pdb_00002itj

Origin binding domain of the SV40 large T antigen (residues 131-259). P212121 crystal form

2NL8 | pdb_00002nl8

The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)

3CS8 | pdb_00003cs8

Structural and Biochemical Basis for the Binding Selectivity of PPARg to PGC-1a

3CWD | pdb_00003cwd

Molecular recognition of nitro-fatty acids by PPAR gamma

3E27 | pdb_00003e27

Nicotinic acid mononucleotide (NaMN) adenylyltransferase from Bacillus anthracis: product complex

3FIU | pdb_00003fiu

Structure of NMN synthetase from Francisella tularensis

3KYT | pdb_00003kyt

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

3L0J | pdb_00003l0j

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

3L0L | pdb_00003l0l

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2GTD | pdb_00002gtd

2HBV | pdb_00002hbv

2HBX | pdb_00002hbx

2IPR | pdb_00002ipr

2ITJ | pdb_00002itj

2NL8 | pdb_00002nl8

3CS8 | pdb_00003cs8

3CWD | pdb_00003cwd

3E27 | pdb_00003e27

3FIU | pdb_00003fiu

3KYT | pdb_00003kyt

3L0J | pdb_00003l0j

3L0L | pdb_00003l0l