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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Leys, D."

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Search Summary

This query matches 330 Structures.

Refinements

Structure Determination Methodology

experimental (330)

Scientific Name of Source Organism

	Aspergillus niger (30)
	Alcaligenes faecalis (27)
	Priestia megaterium (24)
	Mycobacterium tuberculosis H37Rv (23)
	Pseudomonas aeruginosa (17)
	Mycobacterium tuberculosis (12)
	Aspergillus niger CBS 513.88 (10)
	Homo sapiens (9)
	Methylophilus methylotrophus (8)
	Pseudomonas fluorescens (7)

More...

Taxonomy

	Bacteria (256)
	Eukaryota (71)
	other sequences (3)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (330)

Polymer Entity Type

	Protein (327)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (81)
	1.5 - 2.0 (136)
	2.0 - 2.5 (81)
	2.5 - 3.0 (27)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (27)
	2005 - 2009 (71)
	2010 - 2014 (50)
	2015 - 2019 (116)
	2020 - 2024 (58)
	2025 - 2029 (4)

Enzyme Classification Name

	Oxidoreductases (153)
	Lyases (74)
	Transferases (23)
	Isomerases (6)
	Hydrolases (7)

Symmetry Type

	Asymmetric (170)
	Cyclic (137)
	Dihedral (22)
	Tetrahedral (16)

SCOP Classification

	Alpha and beta proteins (a/b) (66)
	All alpha proteins (85)
	Small proteins (27)
	Alpha and beta proteins (a+b) (19)
	All beta proteins (14)
	Artifacts (8)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 330 Structures

Page 1 of 14

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1CXY \| pdb_00001cxy	Download File View File

STRUCTURE AND CHARACTERIZATION OF ECTOTHIORHODOSPIRA VACUOLATA CYTOCHROME B558, A PROKARYOTIC HOMOLOGUE OF CYTOCHROME B5

Kostanjevecki, V., Leys, D., Van Driessche, G., Meyer, T.E., Cusanovich, M.A., Fischer, U., Guisez, Y., Van Beeumen, J.

(1999) J Biological Chem 274: 35614-35620

Released	1999-09-10
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Ectothiorhodospira shaposhnikovii
Macromolecule	CYTOCHROME B5 (protein)
Unique Ligands	HEM

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1D4C \| pdb_00001d4c	Download File View File

CRYSTAL STRUCTURE OF THE UNCOMPLEXED FORM OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1

Leys, D., Tsapin, A.S., Meyer, T.E., Cusanovich, M.A., Van Beeumen, J.J.

(1999) Nat Struct Biol 6: 1113-1117

Released	1999-12-01
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Shewanella oneidensis
Macromolecule	FLAVOCYTOCHROME C FUMARATE REDUCTASE (protein)
Unique Ligands	FAD, HEC, SO4

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1D4D \| pdb_00001d4d	Download File View File

CRYSTAL STRUCTURE OF THE SUCCINATE COMPLEXED FORM OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1

Leys, D., Tsapin, A.S., Meyer, T.E., Cusanovich, M.A., Van Beeumen, J.J.

(1999) Nat Struct Biol 6: 1113-1117

Released	1999-12-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Shewanella oneidensis
Macromolecule	FLAVOCYTOCHROME C FUMARATE REDUCTASE (protein)
Unique Ligands	FAD, HEC, SIN

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1D4E \| pdb_00001d4e	Download File View File

CRYSTAL STRUCTURE OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1 COMPLEXED WITH FUMARATE

Leys, D., Tsapin, A.S., Meyer, T.E., Cusanovich, M.A., Van Beeumen, J.J.

(1999) Nat Struct Biol 6: 1113-1117

Released	1999-12-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Shewanella oneidensis
Macromolecule	FLAVOCYTOCHROME C FUMARATE REDUCTASE (protein)
Unique Ligands	FAD, FUM, HEC

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1DW0 \| pdb_00001dw0	Download File View File

STRUCTURE OF OXIDIZED SHP, AN OXYGEN BINDING CYTOCHROME C

Leys, D., Backers, K., Meyer, T.E., Hagen, W.R., Cusanovich, M.A., Van Beeumen, J.J.

(2000) J Biological Chem 275: 16050-16056

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1DW1 \| pdb_00001dw1	Download File View File

STRUCTURE OF THE CYANIDE COMPLEX OF SHP, AN OXYGEN BINDING CYTOCHROME C

Leys, D., Backers, K., Meyer, T.E., Hagen, W.R., Cusanovich, M.A., Van Beeumen, J.J.

(2000) J Biological Chem 275: 16050-16056

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	CYN, HEC

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1DW2 \| pdb_00001dw2	Download File View File

STRUCTURE OF THE NITRIC OXIDE COMPLEX OF REDUCED SHP, AN OXYGEN BINDING CYTOCHROME C

Leys, D., Backers, K., Meyer, T.E., Hagen, W.R., Cusanovich, M.A., Van Beeumen, J.J.

(2000) J Biological Chem 275: 16050-16056

Released	2000-06-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEM, NO

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1DW3 \| pdb_00001dw3	Download File View File

STRUCTURE OF A REDUCED OXYGEN BINDING CYTOCHROME C

Leys, D., Backers, K., Meyer, T.E., Hagen, W.R., Cusanovich, M.A., Van Beeumen, J.J.

(2000) J Biological Chem 275: 16050-16056

Released	2000-06-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC

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1JNI \| pdb_00001jni	Download File View File

Structure of the NapB subunit of the periplasmic nitrate reductase from Haemophilus influenzae.

Brige, A., Leys, D., Meyer, T.E., Cusanovich, M.A., Van Beeumen, J.J.

(2002) Biochemistry 41: 4827-4836

Released	2002-05-17
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Haemophilus influenzae
Macromolecule	DIHEME CYTOCHROME C NAPB (protein)
Unique Ligands	HEC

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1JRX \| pdb_00001jrx	Download File View File

Crystal structure of Arg402Ala mutant flavocytochrome c3 from Shewanella frigidimarina

Mowat, C.G., Moysey, R., Miles, C.S., Leys, D., Doherty, M.K., Taylor, P., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2001) Biochemistry 40: 12292-12298

Released	2001-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	FLAVOCYTOCHROME C (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1JRY \| pdb_00001jry	Download File View File

Crystal structure of Arg402Lys mutant flavocytochrome c3 from Shewanella frigidimarina

Mowat, C.G., Moysey, R., Miles, C.S., Leys, D., Doherty, M.K., Taylor, P., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2001) Biochemistry 40: 12292-12298

Released	2001-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	FLAVOCYTOCHROME C (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1JRZ \| pdb_00001jrz	Download File View File

Crystal structure of Arg402Tyr mutant flavocytochrome c3 from Shewanella frigidimarina

Mowat, C.G., Moysey, R., Miles, C.S., Leys, D., Doherty, M.K., Taylor, P., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2001) Biochemistry 40: 12292-12298

Released	2001-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	FLAVOCYTOCHROME C (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1KSS \| pdb_00001kss	Download File View File

Crystal Structure of His505Ala Mutant Flavocytochrome c3 from Shewanella frigidimarina

Pankhurst, K.L., Mowat, C.G., Miles, C.S., Leys, D., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2002) Biochemistry 41: 8551-8556

Released	2002-08-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Shewanella frigidimarina
Macromolecule	flavocytochrome c (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1KSU \| pdb_00001ksu	Download File View File

Crystal Structure of His505Tyr Mutant Flavocytochrome c3 from Shewanella frigidimarina

Pankhurst, K.L., Mowat, C.G., Miles, C.S., Leys, D., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2002) Biochemistry 41: 8551-8556

Released	2002-08-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	flavocytochrome c (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1LJ1 \| pdb_00001lj1	Download File View File

Crystal structure of Q363F/R402A mutant flavocytochrome c3

Mowat, C.G., Pankhurst, K.L., Miles, C.S., Leys, D., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2002) Biochemistry 41: 11990-11996

Released	2002-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	flavocytochrome c3 (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1M1P \| pdb_00001m1p	Download File View File

P21 crystal structure of the tetraheme cytochrome c3 from Shewanella oneidensis MR1

Leys, D., Meyer, T.E., Tsapin, A.I., Nealson, K.H., Cusanovich, M.A., Van Beeumen, J.J.

(2002) J Biological Chem 277: 35703-35711

Released	2002-08-14
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Shewanella oneidensis
Macromolecule	Small tetraheme cytochrome c (protein)
Unique Ligands	HEC, SO4

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1M1Q \| pdb_00001m1q	Download File View File

P222 oxidized structure of the tetraheme cytochrome c from Shewanella oneidensis MR1

Leys, D., Meyer, T.E., Tsapin, A.I., Nealson, K.H., Cusanovich, M.A., Van Beeumen, J.J.

(2002) J Biological Chem 277: 35703-35711

Released	2002-08-14
Method	X-RAY DIFFRACTION 0.97 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	small tetraheme cytochrome c (protein)
Unique Ligands	HEC, SO4

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1M1R \| pdb_00001m1r	Download File View File

Reduced p222 crystal structure of the tetraheme cytochrome c of Shewanella oneidensis MR1

Leys, D., Meyer, T.E., Tsapin, A.I., Nealson, K.H., Cusanovich, M.A., Van Beeumen, J.J.

(2002) J Biological Chem 277: 35703-35711

Released	2002-08-14
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Shewanella oneidensis
Macromolecule	SMALL tetraheme cytochrome c (protein)
Unique Ligands	HEC, SO4

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1M64 \| pdb_00001m64	Download File View File

Crystal structure of Q363F mutant flavocytochrome c3

Mowat, C.G., Pankhurst, K.L., Miles, C.S., Leys, D., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2002) Biochemistry 41: 11990-11996

Released	2002-11-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Shewanella frigidimarina
Macromolecule	flavocytochrome c3 (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1N40 \| pdb_00001n40	Download File View File

Atomic structure of CYP121, a mycobacterial P450

Leys, D., Mowat, C.G., McLean, K.J., Richmond, A., Chapman, S.K., Walkinshaw, M.D., Munro, A.W., TB Structural Genomics Consortium (TBSGC)

(2003) J Biological Chem 278: 5141-5147

Released	2003-02-04
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Cytochrome P450 121 (protein)
Unique Ligands	HEM, OXY, SO4

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1N4G \| pdb_00001n4g	Download File View File

Structure of CYP121, a Mycobacterial P450, in Complex with Iodopyrazole

Leys, D., Mowat, C.G., McLean, K.J., Richmond, A., Chapman, S.K., Walkinshaw, M.D., Munro, A.W., TB Structural Genomics Consortium (TBSGC)

(2003) J Biological Chem 278: 5141-5147

Released	2003-02-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Cytochrome P450 121 (protein)
Unique Ligands	HEM, PYZ

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1O94 \| pdb_00001o94	Download File View File

Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (protein) TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, AMP, FMN, SF4

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1O95 \| pdb_00001o95	Download File View File

Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (protein) TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, AMP, FMN, SF4

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1O96 \| pdb_00001o96	Download File View File

Structure of electron transferring flavoprotein for Methylophilus methylotrophus.

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFERRING FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT (protein)
Unique Ligands	AMP, FAD

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1O97 \| pdb_00001o97	Download File View File

Structure of electron transferring flavoprotein from Methylophilus methylotrophus, recognition loop removed by limited proteolysis

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFERRING FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT (protein)
Unique Ligands	AMP, FAD

1 to 25 of 330 Structures

Page 1 of 14

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CXY | pdb_00001cxy

1D4C | pdb_00001d4c

1D4D | pdb_00001d4d

1D4E | pdb_00001d4e

1DW0 | pdb_00001dw0

1DW1 | pdb_00001dw1

1DW2 | pdb_00001dw2

1DW3 | pdb_00001dw3

1JNI | pdb_00001jni

1JRX | pdb_00001jrx

1JRY | pdb_00001jry

1JRZ | pdb_00001jrz

1KSS | pdb_00001kss

1KSU | pdb_00001ksu

1LJ1 | pdb_00001lj1

1M1P | pdb_00001m1p

1M1Q | pdb_00001m1q

1M1R | pdb_00001m1r

1M64 | pdb_00001m64

1N40 | pdb_00001n40

1N4G | pdb_00001n4g

1O94 | pdb_00001o94

1O95 | pdb_00001o95

1O96 | pdb_00001o96

1O97 | pdb_00001o97