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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lander, G."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Byrnievirus HK97 (5)
	Homo sapiens (4)
	Proteus penneri (2)
	Pseudomonas aeruginosa (2)
	Acidianus tengchongensis (1)

Taxonomy

	Duplodnaviria (5)
	Eukaryota (4)
	Bacteria (2)
	Archaea (1)

Experimental Method

	ELECTRON MICROSCOPY (6)
	X-RAY DIFFRACTION (6)

Polymer Entity Type

	Protein (12)
	RNA (5)
	DNA (1)

Refinement Resolution (Å)

	2.5 - 3.0 (1)
	3.5 - 4.0 (5)
	4.0 - 4.5 (4)
	> 4.5 (2)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (1)
	2020 - 2024 (6)

Enzyme Classification Name

	Ligases (4)
	Hydrolases (2)

Symmetry Type

	Asymmetric (5)
	Icosahedral (5)
	Cyclic (1)
	Dihedral (1)

SCOP Classification

Alpha and beta proteins (a+b) (4)

AllSelected

1 to 12 of 12 Structures

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2FRP \| pdb_00002frp	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 7.5 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FS3 \| pdb_00002fs3	Download File View File

Bacteriophage HK97 K169Y Head I

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FSY \| pdb_00002fsy	Download File View File

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FT1 \| pdb_00002ft1	Download File View File

Bacteriophage HK97 Head II

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FTE \| pdb_00002fte	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

Explore in 3D

3KO1 \| pdb_00003ko1	Download File View File

Cystal structure of thermosome from Acidianus tengchongensis strain S5

Huo, Y., Zhang, K., Hu, Z., Wang, L., Zhai, Y., Zhou, Q., Lander, G., He, Y., Zhu, J., Xu, W., Dong, Z., Sun, F.

(2010) Structure 18: 1270-1279

Released	2010-11-03
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Acidianus tengchongensis
Macromolecule	Chaperonin (protein)
Unique Ligands	ADP

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6W1X \| pdb_00006w1x	Download File View File

Cryo-EM structure of anti-CRISPR AcrIF9, bound to the type I-F crRNA-guided CRISPR surveillance complex

Hirschi, M., Santiago-Frangos, A., Wilkinson, R., Golden, S.M., Wiedenheft, B., Lander, G.

(2020) Nat Commun 11: 2730-2730

Released	2020-05-13
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Proteus penneri Pseudomonas aeruginosa
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 1

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6WHI \| pdb_00006whi	Download File View File

Cryo-electron microscopy structure of the type I-F CRISPR RNA-guided surveillance complex bound to the anti-CRISPR AcrIF9

Hirschi, M., Santiago-Frangos, A., Wilkinson, R., Golden, S.M., Wiedenheft, B., Lander, G.

(2020) Nat Commun 11: 2730-2730

Released	2020-05-13
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Proteus penneri Pseudomonas aeruginosa
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 3

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7TZB \| pdb_00007tzb	Download File View File

Crystal structure of the human mitochondrial seryl-tRNA synthetase (mt SerRS) bound with a seryl-adenylate analogue

Kuhle, B., Hirschi, M., Doerfel, L., Lander, G., Schimmel, P.

(2022) Nat Commun 13: 5100-5100

Released	2022-09-14
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Serine--tRNA ligase, mitochondrial (protein)
Unique Ligands	SSA

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7U2A \| pdb_00007u2a	Download File View File

Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA (GCU)

Hirschi, M., Kuhle, B., Doerfel, L., Schimmel, P., Lander, G.

(2022) Nat Commun 13: 5100-5100

Released	2022-09-14
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens
Macromolecule	Serine--tRNA ligase, mitochondrial (protein) RNA (38-MER) (nucleic acid)
Unique Ligands	SSA

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7U2B \| pdb_00007u2b	Download File View File

Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(GCU-TL)

Hirschi, M., Kuhle, B., Doerfel, L., Schimmel, P., Lander, G.

(2022) Nat Commun 13: 5100-5100

Released	2022-09-14
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens
Macromolecule	Serine--tRNA ligase, mitochondrial (protein) RNA (53-MER) (nucleic acid)
Unique Ligands	SSA

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8FFY \| pdb_00008ffy	Download File View File

Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(UGA-TL)

Hirschi, M., Kuhle, B., Doerfel, L., Schimmel, P., Lander, G.

(2023) Nat Commun 14: 4794-4794

Released	2023-08-23
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Serine--tRNA ligase, mitochondrial (protein) mt-tRNA(UGA-TL) (nucleic acid)
Unique Ligands	SSA

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2FRP | pdb_00002frp

Bacteriophage HK97 Expansion Intermediate IV

2FS3 | pdb_00002fs3

Bacteriophage HK97 K169Y Head I

2FSY | pdb_00002fsy

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV

2FT1 | pdb_00002ft1

Bacteriophage HK97 Head II

2FTE | pdb_00002fte

Bacteriophage HK97 Expansion Intermediate IV

3KO1 | pdb_00003ko1

Cystal structure of thermosome from Acidianus tengchongensis strain S5

6W1X | pdb_00006w1x

Cryo-EM structure of anti-CRISPR AcrIF9, bound to the type I-F crRNA-guided CRISPR surveillance complex

6WHI | pdb_00006whi

Cryo-electron microscopy structure of the type I-F CRISPR RNA-guided surveillance complex bound to the anti-CRISPR AcrIF9

7TZB | pdb_00007tzb

Crystal structure of the human mitochondrial seryl-tRNA synthetase (mt SerRS) bound with a seryl-adenylate analogue

7U2A | pdb_00007u2a

Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA (GCU)

7U2B | pdb_00007u2b

Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(GCU-TL)

8FFY | pdb_00008ffy

Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(UGA-TL)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2FRP | pdb_00002frp

2FS3 | pdb_00002fs3

2FSY | pdb_00002fsy

2FT1 | pdb_00002ft1

2FTE | pdb_00002fte

3KO1 | pdb_00003ko1

6W1X | pdb_00006w1x

6WHI | pdb_00006whi

7TZB | pdb_00007tzb

7U2A | pdb_00007u2a

7U2B | pdb_00007u2b

8FFY | pdb_00008ffy