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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gu, X."

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Homo sapiens (18)
	Oryza sativa (8)
	Arabidopsis thaliana (4)
	Brachypodium distachyon (3)
	Cyriopagopus hainanus (2)
	Cyriopagopus schmidti (2)
	Danio rerio (2)
	Mus musculus (2)
	Amaranthus hypochondriacus (1)
	Anser indicus (1)

More...

Taxonomy

	Eukaryota (41)
	Bacteria (3)
	Eukaryota (eukaryotes) (2)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (36)
	SOLUTION NMR (8)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (44)
	RNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (11)
	2.5 - 3.0 (9)
	3.0 - 3.5 (7)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (3)
	2005 - 2009 (7)
	2010 - 2014 (10)
	2015 - 2019 (20)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (5)
	Isomerases (2)
	Ligases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	OPM (5)
	MemProtMD (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (31)
	Cyclic (7)
	Dihedral (9)

SCOP Classification

	All alpha proteins (4)
	Small proteins (6)
	Alpha and beta proteins (a+b) (5)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 45 Structures

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1A4F \| pdb_00001a4f	Download File View File

BAR-HEADED GOOSE HEMOGLOBIN (OXY FORM)

Zhang, J., Gu, X.

(1996) J Mol Biology 255: 484-493

Released	1998-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Anser indicus
Macromolecule	HEMOGLOBIN (ALPHA CHAIN) (protein) HEMOGLOBIN (BETA CHAIN) (protein)
Unique Ligands	HEM, OXY

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1NIY \| pdb_00001niy	Download File View File

THREE DIMENSIONAL SOLUTION STRUCTURE OF HAINANTOXIN-IV BY 2D 1H-NMR

Li, D., Lu, S., Gu, X., Liang, S.

(2004) J Biological Chem 279: 37734-37740

Released	2003-01-14
Method	SOLUTION NMR
Organisms	Haplopelma hainanum
Macromolecule	HAINANTOXIN-IV (protein)

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1QFD \| pdb_00001qfd	Download File View File

NMR SOLUTION STRUCTURE OF ALPHA-AMYLASE INHIBITOR (AAI)

Lu, S., Deng, P., Liu, X., Luo, J., Han, R., Gu, X., Liang, S., Wang, X., Feng, L., Lozanov, V., Patthy, A., Pongor, S.

(1999) J Biological Chem 274: 20473-20478

Released	1999-07-16
Method	SOLUTION NMR
Organisms	Amaranthus hypochondriacus
Macromolecule	PROTEIN (ALPHA-AMYLASE INHIBITOR) (protein)

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1QK6 \| pdb_00001qk6	Download File View File

Solution structure of huwentoxin-I by NMR

Qu, Y., Liang, S., Ding, J., Liu, X., Zhang, R., Gu, X.

(1997) J Protein Chem 16: 565-574

Released	1999-08-20
Method	SOLUTION NMR
Organisms	Cyriopagopus schmidti
Macromolecule	HUWENTOXIN-I (protein)

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1QK7 \| pdb_00001qk7	Download File View File

Solution structure of Selenocosmia huwena lectin-I(SHL-I) by 2D-NMR

Lu, S., Liang, S., Gu, X.

(2000) J Protein Chem 18: 609

Released	1999-08-20
Method	SOLUTION NMR
Organisms	Cyriopagopus schmidti
Macromolecule	SELENOCOSMIA HUWENA LECTIN-I (protein)

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1RYG \| pdb_00001ryg	Download File View File

Three dimensional solution structure of the R29A MUTANT of sodium channels inhibitor HAINANTOXIN-IV by 2D 1H-NMR

Li, D., Lu, S., Gu, X., Liang, S.

(2004) J Biological Chem 279: 37734-37740

Released	2004-01-13
Method	SOLUTION NMR
Organisms	Cyriopagopus hainanus
Macromolecule	Hainantoxin-IV (protein)

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1RYV \| pdb_00001ryv	Download File View File

Three dimensional solution structure of the K27A MUTANT of sodium channels inhibitor HAINANTOXIN-IV BY 2D 1H-NMR

Li, D., Lu, S., Gu, X., Liang, S.

(2004) J Biological Chem 279: 37734-37740

Released	2004-01-13
Method	SOLUTION NMR
Organisms	Cyriopagopus hainanus
Macromolecule	Hainantoxin-IV (protein)

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1YC1 \| pdb_00001yc1	Download File View File

Crystal Structures of human HSP90alpha complexed with dihydroxyphenylpyrazoles

Kreusch, A., Han, S., Brinker, A., Zhou, V., Choi, H., He, Y., Lesley, S.A., Caldwell, J., Gu, X.

(2005) Bioorg Med Chem Lett 15: 1475-1478

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	4BC

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1YC3 \| pdb_00001yc3	Download File View File

Crystal Structure of human HSP90alpha complexed with dihydroxyphenylpyrazoles

Kreusch, A., Han, S., Brinker, A., Zhou, V., Choi, H., He, Y., Lesley, S.A., Caldwell, J., Gu, X.

(2005) Bioorg Med Chem Lett 15: 1475-1478

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	4BC

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1YC4 \| pdb_00001yc4	Download File View File

Crystal structure of human HSP90alpha complexed with dihydroxyphenylpyrazoles

Kreusch, A., Han, S., Brinker, A., Zhou, V., Choi, H., He, Y., Lesley, S.A., Caldwell, J., Gu, X.

(2005) Bioorg Med Chem Lett 15: 1475-1478

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	43P

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1YFZ \| pdb_00001yfz	Download File View File

Novel IMP Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase from Thermoanaerobacter tengcongensis

Chen, Q., Liang, Y., Su, X., Gu, X., Zheng, X., Luo, M.

(2005) J Mol Biology 348: 1199-1210

Released	2005-05-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Caldanaerobacter subterraneus subsp. tengcongensis MB4
Macromolecule	Hypoxanthine-guanine phosphoribosyltransferase (protein)
Unique Ligands	ACT, IMP, MG

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2A7R \| pdb_00002a7r	Download File View File

Crystal structure of human Guanosine Monophosphate reductase 2 (GMPR2)

Li, J., Wei, Z., Zheng, M., Gu, X., Deng, Y., Qiu, R., Chen, F., Ji, C., Gong, W., Xie, Y., Mao, Y.

(2006) J Mol Biology 355: 980-988

Released	2006-01-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	GMP reductase 2 (protein)
Unique Ligands	5GP, SO4

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2EXX \| pdb_00002exx	Download File View File

Crystal structure of HSCARG from Homo sapiens in complex with NADP

Dai, X., Chen, Q., Yao, D., Liang, Y., Dong, Y., Gu, X., Zheng, X., Luo, M.

(2007) Proc Natl Acad Sci U S A 104: 8809-8814

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	HSCARG protein (protein)
Unique Ligands	GOL, NAP

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2NCI \| pdb_00002nci	Download File View File

RNA Bulge Loop that Specifically Binds Metal Ions

Gu, X., Schroeder, S.J.

(2016) J Phys Chem Lett 7: 3841-3846

Released	2016-09-28
Method	SOLUTION NMR
Macromolecule	RNA (28-MER) (nucleic acid)

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3D9H \| pdb_00003d9h	Download File View File

Crystal Structure of the Splice Variant of Human ASB9 (hASB9-2), an Ankyrin Repeat Protein

Fei, X., Gu, X., Fan, S., Zhang, C., Ji, C.

To be published

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	cDNA FLJ77766, highly similar to Homo sapiens ankyrin repeat and SOCS box-containing 9 (ASB9), transcript variant 2, mRNA (protein)

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3TCX \| pdb_00003tcx	Download File View File

Structure of Engineered Single Domain ICAM-1 D1 with High-Affinity aL Integrin I Domain of Native C-Terminal Helix Conformation

Kang, S., Kim, C.U., Gu, X., Owens, R.M., van Rijn, S.J., Boonyaleepun, V., Mao, Y., Springer, T.A., Jin, M.M.

To be published

Released	2011-08-31
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-L (protein) Intercellular adhesion molecule 1 (protein)
Unique Ligands	MG

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3W5O \| pdb_00003w5o	Download File View File

Crystal Structure of Human DNA ligase IV

Gu, X., Ochi, T., Blundell, T.L.

(2013) Structure 21: 672-679

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Homo sapiens
Macromolecule	DNA ligase 4 (protein)
Unique Ligands	ATP, SO4

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4LEU \| pdb_00004leu	Download File View File

Crystal Structure of THA8-like protein from Arabidopsis thaliana

Ke, J., Chen, R.Z., Ban, T., Brunzelle, J.S., Gu, X., Kang, Y., Melcher, K., Zhu, J.K., Xu, H.E.

(2013) J Biological Chem 288: 31540-31548

Released	2013-09-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Pentatricopeptide repeat-containing protein At3g46870 (protein)

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4ME2 \| pdb_00004me2	Download File View File

Crystal Structure of THA8 protein from Brachypodium distachyon

Ke, J., Chen, R.Z., Ban, T., Brunzelle, J.S., Gu, X., Melcher, K., Xu, H.E.

(2013) Nat Struct Mol Biol 20: 1377-1382

Released	2013-10-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Brachypodium distachyon
Macromolecule	Uncharacterized protein (protein)

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4MY2 \| pdb_00004my2	Download File View File

Crystal Structure of Norrin in fusion with Maltose Binding Protein

Ke, J., Jurecky, C., Chen, C., Gu, X., Parker, N., Williams, B.O., Melcher, K., Xu, H.E.

(2013) Genes Dev 27: 2305-2319

Released	2013-11-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli O157:H7 Homo sapiens
Macromolecule	Maltose-binding periplasmic protein, Norrin fusion protein (protein)
Unique branched monosaccharides	GLC

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4N2Q \| pdb_00004n2q	Download File View File

Crystal structure of THA8 in complex with Zm4 RNA

Ke, J., Chen, R.Z., Ban, T., Zhou, X.E., Gu, X., Brunzelle, J.S., Zhu, J.K., Melcher, K., Xu, H.E.

(2013) Nat Struct Mol Biol 20: 1377-1382

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Brachypodium distachyon
Macromolecule	THA8 RNA binding protein (protein) RNA (5'-R(APAPGPAPAPGPAPAPAPUPUPGP*G)-3') (nucleic acid)

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4N2S \| pdb_00004n2s	Download File View File

Crystal Structure of THA8 in complex with Zm1a-6 RNA

Ke, J., Chen, R.Z., Ban, T., Zhou, X.E., Gu, X., Brunzelle, J.S., Zhu, J.K., Melcher, K., Xu, H.E.

(2013) Nat Struct Mol Biol 20: 1377-1382

Released	2013-10-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Brachypodium distachyon
Macromolecule	THA8 RNA binding protein (protein) Zm1a-6 RNA (nucleic acid)

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4PW2 \| pdb_00004pw2	Download File View File

Crystal structure of D-glucuronyl C5 epimerase

Ke, J., Qin, Y., Gu, X., Brunzelle, J.S., Xu, H.E., Ding, K.

(2015) J Biological Chem 290: 4620-4630

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Danio rerio
Macromolecule	D-glucuronyl C5 epimerase B (protein)
Unique Ligands	CIT

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4PXQ \| pdb_00004pxq	Download File View File

Crystal structure of D-glucuronyl C5-epimerase in complex with heparin hexasaccharide

Ke, J., Qin, Y., Gu, X., Tan, J., Brunzelle, J.S., Xu, H.E., Ding, K.

(2015) J Biological Chem 290: 4620-4630

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Danio rerio
Macromolecule	D-glucuronyl C5 epimerase B (protein)
Unique branched monosaccharides	IDS, SGN, UAP

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4RED \| pdb_00004red	Download File View File

Crystal structure of human AMPK alpha1 KD-AID with K43A mutation

Zhou, X.E., Ke, J., Li, X., Wang, L., Gu, X., de Waal, P.W., Tan, M.H.E., Wang, D., Wu, D., Xu, H.E., Melcher, K.

(2015) Cell Res 25: 50-66

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	5'-AMP-activated protein kinase catalytic subunit alpha-1 (protein)

1 to 25 of 45 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A4F | pdb_00001a4f

1NIY | pdb_00001niy

1QFD | pdb_00001qfd

1QK6 | pdb_00001qk6

1QK7 | pdb_00001qk7

1RYG | pdb_00001ryg

1RYV | pdb_00001ryv

1YC1 | pdb_00001yc1

1YC3 | pdb_00001yc3

1YC4 | pdb_00001yc4

1YFZ | pdb_00001yfz

2A7R | pdb_00002a7r

2EXX | pdb_00002exx

2NCI | pdb_00002nci

3D9H | pdb_00003d9h

3TCX | pdb_00003tcx

3W5O | pdb_00003w5o

4LEU | pdb_00004leu

4ME2 | pdb_00004me2

4MY2 | pdb_00004my2

4N2Q | pdb_00004n2q

4N2S | pdb_00004n2s

4PW2 | pdb_00004pw2

4PXQ | pdb_00004pxq

4RED | pdb_00004red