RCSB PDB: Search

3JCZ \| pdb_00003jcz	Download File View File

Structure of bovine glutamate dehydrogenase in the unliganded state

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)

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3JD0 \| pdb_00003jd0	Download File View File

Glutamate dehydrogenase in complex with GTP

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.47 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GTP

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3JD1 \| pdb_00003jd1	Download File View File

Glutamate dehydrogenase in complex with NADH, closed conformation

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	NAI

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3JD2 \| pdb_00003jd2	Download File View File

Glutamate dehydrogenase in complex with NADH, open conformation

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	NAI

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3JD3 \| pdb_00003jd3	Download File View File

Glutamate dehydrogenase in complex with NADH and GTP, open conformation

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GTP, NAI

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3JD4 \| pdb_00003jd4	Download File View File

Glutamate dehydrogenase in complex with NADH and GTP, closed conformation

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GTP, NAI

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5FTJ \| pdb_00005ftj	Download File View File

Cryo-EM structure of human p97 bound to UPCDC30245 inhibitor

Banerjee, S., Bartesaghi, A., Merk, A., Rao, P., Bulfer, S.L., Yan, Y., Green, N., Mroczkowski, B., Neitz, R.J., Wipf, P., Falconieri, V., Deshaies, R.J., Milne, J.L.S., Huryn, D., Arkin, M., Subramaniam, S.

(2016) Science 351: 871

Released	2016-01-27
Method	ELECTRON MICROSCOPY 2.3 Å
Organisms	Homo sapiens
Macromolecule	TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (protein)
Unique Ligands	ADP, OJA

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5FTK \| pdb_00005ftk	Download File View File

Cryo-EM structure of human p97 bound to ADP

Banerjee, S., Bartesaghi, A., Merk, A., Rao, P., Bulfer, S.L., Yan, Y., Green, N., Mroczkowski, B., Neitz, R.J., Wipf, P., Falconieri, V., Deshaies, R.J., Milne, J.L.S., Huryn, D., Arkin, M., Subramaniam, S.

(2016) Science 351: 871

Released	2016-01-27
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Homo sapiens
Macromolecule	TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (protein)
Unique Ligands	ADP

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5FTL \| pdb_00005ftl	Download File View File

Cryo-EM structure of human p97 bound to ATPgS (Conformation I)

Banerjee, S., Bartesaghi, A., Merk, A., Rao, P., Bulfer, S.L., Yan, Y., Green, N., Mroczkowski, B., Neitz, R.J., Wipf, P., Falconieri, V., Deshaies, R.J., Milne, J.L.S., Huryn, D., Arkin, M., Subramaniam, S.

(2016) Science 351: 871

Released	2016-01-27
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (protein)
Unique Ligands	ADP

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5FTM \| pdb_00005ftm	Download File View File

Cryo-EM structure of human p97 bound to ATPgS (Conformation II)

Banerjee, S., Bartesaghi, A., Merk, A., Rao, P., Bulfer, S.L., Yan, Y., Green, N., Mroczkowski, B., Neitz, R.J., Wipf, P., Falconieri, V., Deshaies, R.J., Milne, J.L.S., Huryn, D., Arkin, M., Subramaniam, S.

(2016) Science 351: 871

Released	2016-01-27
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (protein)
Unique Ligands	ADP, AGS, MG

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5FTN \| pdb_00005ftn	Download File View File

Cryo-EM structure of human p97 bound to ATPgS (Conformation III)

Banerjee, S., Bartesaghi, A., Merk, A., Rao, P., Bulfer, S.L., Yan, Y., Green, N., Mroczkowski, B., Neitz, R.J., Wipf, P., Falconieri, V., Deshaies, R.J., Milne, J.L.S., Huryn, D., Arkin, M., Subramaniam, S.

(2016) Science 351: 871

Released	2016-01-27
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (protein)
Unique Ligands	AGS, MG

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5K0Z \| pdb_00005k0z	Download File View File

Cryo-EM structure of lactate dehydrogenase (LDH) in inhibitor-bound state

Merk, A., Bartesaghi, A., Banerjee, S., Falconieri, V., Rao, P., Earl, L., Milne, J., Subramaniam, S.

(2016) Cell 165: 1698-1707

Released	2016-06-08
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Gallus gallus
Macromolecule	L-lactate dehydrogenase B chain (protein)

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5K10 \| pdb_00005k10	Download File View File

Cryo-EM structure of isocitrate dehydrogenase (IDH1)

Merk, A., Bartesaghi, A., Banerjee, S., Falconieri, V., Rao, P., Earl, L., Milne, J., Subramaniam, S.

(2016) Cell 165: 1698-1707

Released	2016-06-08
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Isocitrate dehydrogenase [NADP] cytoplasmic (protein)
Unique Ligands	NDP

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5K11 \| pdb_00005k11	Download File View File

Cryo-EM structure of isocitrate dehydrogenase (IDH1) in inhibitor-bound state

Merk, A., Bartesaghi, A., Banerjee, S., Falconieri, V., Rao, P., Earl, L., Milne, J., Subramaniam, S.

(2016) Cell 165: 1698-1707

Released	2016-06-08
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Isocitrate dehydrogenase [NADP] cytoplasmic (protein)
Unique Ligands	NDP

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5K12 \| pdb_00005k12	Download File View File

Cryo-EM structure of glutamate dehydrogenase at 1.8 A resolution

Merk, A., Bartesaghi, A., Banerjee, S., Falconieri, V., Rao, P., Earl, L., Milne, J., Subramaniam, S.

(2016) Cell 165: 1698-1707

Released	2016-06-08
Method	ELECTRON MICROSCOPY 1.8 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)

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6B44 \| pdb_00006b44	Download File View File

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound target dsDNA

Guo, T.W., Bartesaghi, A., Yang, H., Falconieri, V., Rao, P., Merk, A., Fox, T., Earl, L., Patel, D.J., Subramaniam, S.

(2017) Cell 171: 414-426.e12

Released	2017-10-18
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Pseudomonas aeruginosa Pseudomonas aeruginosa UCBPP-PA14 synthetic construct
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 3

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6B45 \| pdb_00006b45	Download File View File

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex

Guo, T.W., Bartesaghi, A., Yang, H., Falconieri, V., Rao, P., Merk, A., Fox, T., Earl, L., Patel, D.J., Subramaniam, S.

(2017) Cell 171: 414-426.e12

Released	2017-10-18
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Pseudomonas aeruginosa Pseudomonas aeruginosa UCBPP-PA14
Macromolecule	CRISPR-associated endonuclease Cas6/Csy4 (protein) CRISPR-associated protein Csy1 (protein) CRISPR-associated protein Csy2 (protein) CRISPR-associated protein Csy3 (protein) Pseudomonas aeruginosa strain SMC4485 CRISPR repeat sequence (nucleic acid)

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6B46 \| pdb_00006b46	Download File View File

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF1

Guo, T.W., Bartesaghi, A., Yang, H., Falconieri, V., Rao, P., Merk, A., Fox, T., Earl, L., Patel, D.J., Subramaniam, S.

(2017) Cell 171: 414-426.e12

Released	2017-10-18
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Pseudomonas aeruginosa Pseudomonas aeruginosa UCBPP-PA14 Pseudomonas phage JBD30
Macromolecule	Anti-CRISPR protein AcrF1 (protein) CRISPR-associated endonuclease Cas6/Csy4 (protein) CRISPR-associated protein Csy3 (protein) Pseudomonas aeruginosa strain SMC4485 CRISPR repeat sequence (nucleic acid)

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6B47 \| pdb_00006b47	Download File View File

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF2

Guo, T.W., Bartesaghi, A., Yang, H., Falconieri, V., Rao, P., Merk, A., Fox, T., Earl, L., Patel, D.J., Subramaniam, S.

(2017) Cell 171: 414-426.e12

Released	2017-10-18
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Casadabanvirus D3112 Pseudomonas aeruginosa Pseudomonas aeruginosa UCBPP-PA14
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 1

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6B48 \| pdb_00006b48	Download File View File

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF10

Guo, T.W., Bartesaghi, A., Yang, H., Falconieri, V., Rao, P., Merk, A., Fox, T., Earl, L., Patel, D.J., Subramaniam, S.

(2017) Cell 171: 414-426.e12

Released	2017-10-18
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Pseudomonas aeruginosa Pseudomonas aeruginosa UCBPP-PA14 Shewanella xiamenensis
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 1

3JCZ | pdb_00003jcz

Structure of bovine glutamate dehydrogenase in the unliganded state

3JD0 | pdb_00003jd0

Glutamate dehydrogenase in complex with GTP

3JD1 | pdb_00003jd1

Glutamate dehydrogenase in complex with NADH, closed conformation

3JD2 | pdb_00003jd2

Glutamate dehydrogenase in complex with NADH, open conformation

3JD3 | pdb_00003jd3

Glutamate dehydrogenase in complex with NADH and GTP, open conformation

3JD4 | pdb_00003jd4

Glutamate dehydrogenase in complex with NADH and GTP, closed conformation

5FTJ | pdb_00005ftj

Cryo-EM structure of human p97 bound to UPCDC30245 inhibitor

5FTK | pdb_00005ftk

Cryo-EM structure of human p97 bound to ADP

5FTL | pdb_00005ftl

Cryo-EM structure of human p97 bound to ATPgS (Conformation I)

5FTM | pdb_00005ftm

Cryo-EM structure of human p97 bound to ATPgS (Conformation II)

5FTN | pdb_00005ftn

Cryo-EM structure of human p97 bound to ATPgS (Conformation III)

5K0Z | pdb_00005k0z

Cryo-EM structure of lactate dehydrogenase (LDH) in inhibitor-bound state

5K10 | pdb_00005k10

Cryo-EM structure of isocitrate dehydrogenase (IDH1)

5K11 | pdb_00005k11

Cryo-EM structure of isocitrate dehydrogenase (IDH1) in inhibitor-bound state

5K12 | pdb_00005k12

Cryo-EM structure of glutamate dehydrogenase at 1.8 A resolution

6B44 | pdb_00006b44

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound target dsDNA

6B45 | pdb_00006b45

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex

6B46 | pdb_00006b46

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF1

6B47 | pdb_00006b47

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF2

6B48 | pdb_00006b48

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF10

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3JCZ | pdb_00003jcz

3JD0 | pdb_00003jd0

3JD1 | pdb_00003jd1

3JD2 | pdb_00003jd2

3JD3 | pdb_00003jd3

3JD4 | pdb_00003jd4

5FTJ | pdb_00005ftj

5FTK | pdb_00005ftk

5FTL | pdb_00005ftl

5FTM | pdb_00005ftm

5FTN | pdb_00005ftn

5K0Z | pdb_00005k0z

5K10 | pdb_00005k10

5K11 | pdb_00005k11

5K12 | pdb_00005k12

6B44 | pdb_00006b44

6B45 | pdb_00006b45

6B46 | pdb_00006b46

6B47 | pdb_00006b47

6B48 | pdb_00006b48