RCSB PDB: Search

3QQV \| pdb_00003qqv	Download File View File

Crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with isoprenyl diphosphate and magnesium

Patskovsky, Y., Toro, R., Sauder, J.M., Poulter, C.D., Gerlt, J.A., Burley, S.K., Almo, S.C., Enzyme Function Initiative (EFI), New York SGX Research Center for Structural Genomics (NYSGXRC)

(2013) Proc Natl Acad Sci U S A 110: E1196-E1202

Released	2011-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Corynebacterium glutamicum
Macromolecule	Geranylgeranyl pyrophosphate synthase (protein)
Unique Ligands	DMA, GOL, MG, UNL

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3QU2 \| pdb_00003qu2	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, a closed cap conformation

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	CIT, CL, GOL, MG

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3QU4 \| pdb_00003qu4	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, asp13ala mutant

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	ACT, CL, MG

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3QU5 \| pdb_00003qu5	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, asp11asn mutant

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	CL

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3QU7 \| pdb_00003qu7	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, asp13asn mutant complexed with calcium and phosphate

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	ACT, CA, PO4

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3QU9 \| pdb_00003qu9	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, asp13asn mutant complexed with magnesium and tartrate

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	CL, GOL, MG, TLA

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3QUB \| pdb_00003qub	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, glu47ala mutant complexed with sulfate

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	SO4

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3QUC \| pdb_00003quc	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, glu47asn mutant complexed with sulfate

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	SO4

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3QUQ \| pdb_00003quq	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, an open cap conformation

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	CL, FMT, MG, UNL

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3QUT \| pdb_00003qut	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, asp13asn mutant, an open cap conformation

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	CL, MG, MLT

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3QX7 \| pdb_00003qx7	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron complexed with phosphate, a closed cap conformation

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	MG, PO4

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3QXG \| pdb_00003qxg	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron complexed with calcium, a closed cap conformation

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	ACT, CA, MG, PO4, TLA

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3QYP \| pdb_00003qyp	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, glu47asn mutant complexed with calcium and phosphate

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	CA, CL, GOL, PO4, UNL

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3R09 \| pdb_00003r09	Download File View File

Crystal structure of probable HAD family hydrolase from Pseudomonas fluorescens Pf-5 with bound Mg

Vetting, M.W., Patskovsky, Y., Toro, R., Freeman, J., Miller, S., Sauder, J.M., Burley, S.K., Dunaway-Mariano, D., Allen, K.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI), New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2011-04-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas protegens Pf-5
Macromolecule	Hydrolase, haloacid dehalogenase-like family (protein)
Unique Ligands	MG, SO4

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3R9K \| pdb_00003r9k	Download File View File

Crystal structure of pyrophosphatase from bacteroides thetaiotaomicron, glu47asp mutant complexed with sulfate, a closed cap conformation

Patskovsky, Y., Huang, H., Toro, R., Gerlt, J.A., Burley, S.K., Dunaway-Mariano, D., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC), Enzyme Function Initiative (EFI)

(2011) Biochemistry 50: 8937-8949

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	Putative beta-phosphoglucomutase (protein)
Unique Ligands	SO4

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3RCM \| pdb_00003rcm	Download File View File

crystal structure of EFI target 500140:TatD family hydrolase from Pseudomonas putida

Kim, J., Toro, R., Hillerich, B., Seidel, R.D., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-04-20
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	TatD family hydrolase (protein)
Unique Ligands	ACT, CIT, ZN

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3RHG \| pdb_00003rhg	Download File View File

Crystal structure of amidohydrolase pmi1525 (target efi-500319) from proteus mirabilis hi4320

Patskovsky, Y., Hillerich, B., Seidel, R.D., Zencheck, W.D., Toro, R., Imker, H.J., Raushel, F.M., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Proteus mirabilis HI4320
Macromolecule	Putative phophotriesterase (protein)
Unique Ligands	BEZ, CAC, SO4, UNL, ZN

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3RMG \| pdb_00003rmg	Download File View File

Crystal structure of geranylgeranyl pyrophosphate synthase from bacteroides thetaiotaomicron

Patskovsky, Y., Toro, R., Sauder, J.M., Poulter, C.D., Gerlt, J.A., Burley, S.K., Almo, S.C., Enzyme Function Initiative (EFI), New York SGX Research Center for Structural Genomics (NYSGXRC)

(2013) Proc Natl Acad Sci U S A 110: E1196-E1202

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	Octaprenyl-diphosphate synthase (protein)

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3RR1 \| pdb_00003rr1	Download File View File

Crystal structure of enolase PRK14017 (target EFI-500653) from Ralstonia pickettii 12J

Patskovsky, Y., Hillerich, B., Seidel, R.D., Zencheck, W.D., Toro, R., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	Putative D-galactonate dehydratase (protein)
Unique Ligands	CL, MLT

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3RRA \| pdb_00003rra	Download File View File

Crystal structure of enolase PRK14017 (target EFI-500653) from Ralstonia pickettii 12J with magnesium bound

Patskovsky, Y., Ramagopal, U.A., Hillerich, B., Seidel, R.D., Zencheck, W.D., Toro, R., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	Putative D-galactonate dehydratase (protein)
Unique Ligands	CL, MG

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3S4T \| pdb_00003s4t	Download File View File

Crystal structure of putative amidohydrolase-2 (EFI-target 500288)from Polaromonas sp. JS666

Ramagopal, U.A., Toro, R., Girlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-08-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Polaromonas sp. JS666
Macromolecule	Amidohydrolase 2 (protein)
Unique Ligands	ACT, CL, EPE, GOL, SO4

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3SJN \| pdb_00003sjn	Download File View File

Crystal structure of enolase Spea_3858 (target EFI-500646) from Shewanella pealeana with magnesium bound

Patskovsky, Y., Kim, J., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-07-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Shewanella pealeana ATCC 700345
Macromolecule	Mandelate racemase/muconate lactonizing protein (protein)
Unique Ligands	GOL, MG, UNL

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3T6C \| pdb_00003t6c	Download File View File

Crystal structure of an enolase from pantoea ananatis (efi target efi-501676) with bound d-gluconate and mg

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-08-31
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Pantoea ananatis LMG 20103
Macromolecule	Putative ManD family dehydratase (protein)
Unique Ligands	CL, EDO, GCO, MG, UNX

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3THU \| pdb_00003thu	Download File View File

Crystal structure of an enolase from sphingomonas sp. ska58 (efi target efi-501683) with bound mg

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingomonas sp. SKA58
Macromolecule	Mandelate racemase / muconate lactonizing enzyme family protein (protein)
Unique Ligands	CL, GOL, MG, UNX

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3TJ4 \| pdb_00003tj4	Download File View File

Crystal structure of an enolase from agrobacterium tumefaciens (efi target efi-502087) no mg

Vetting, M.W., Bouvier, J.T., Wasserman, S.R., Morisco, L.L., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Mandelate racemase (protein)
Unique Ligands	CL, GOL, PO4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3QQV | pdb_00003qqv

3QU2 | pdb_00003qu2

3QU4 | pdb_00003qu4

3QU5 | pdb_00003qu5

3QU7 | pdb_00003qu7

3QU9 | pdb_00003qu9

3QUB | pdb_00003qub

3QUC | pdb_00003quc

3QUQ | pdb_00003quq

3QUT | pdb_00003qut

3QX7 | pdb_00003qx7

3QXG | pdb_00003qxg

3QYP | pdb_00003qyp

3R09 | pdb_00003r09

3R9K | pdb_00003r9k

3RCM | pdb_00003rcm

3RHG | pdb_00003rhg

3RMG | pdb_00003rmg

3RR1 | pdb_00003rr1

3RRA | pdb_00003rra

3S4T | pdb_00003s4t

3SJN | pdb_00003sjn

3T6C | pdb_00003t6c

3THU | pdb_00003thu

3TJ4 | pdb_00003tj4