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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Dai, X."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (9)
	Human herpesvirus 8 strain GK18 (4)
	Influenza A virus (A/Moscow/10/1999(H3N2)) (3)
	Acidithiobacillus caldus SM-1 (1)
	Deinagkistrodon acutus (1)
	Haliotis diversicolor (1)
	Rattus norvegicus (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (12)
	Duplodnaviria (4)
	Riboviria (3)
	Bacteria (1)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (6)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (1)
	2015 - 2019 (6)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (2)

Membrane Protein Annotation

PDBTM (2)

Symmetry Type

	Asymmetric (11)
	Cyclic (5)
	Dihedral (1)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 18 of 18 Structures

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2EXX \| pdb_00002exx	Download File View File

Crystal structure of HSCARG from Homo sapiens in complex with NADP

Dai, X., Chen, Q., Yao, D., Liang, Y., Dong, Y., Gu, X., Zheng, X., Luo, M.

(2007) Proc Natl Acad Sci U S A 104: 8809-8814

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	HSCARG protein (protein)
Unique Ligands	GOL, NAP

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3DXF \| pdb_00003dxf	Download File View File

Crystal structure of the HSCARG R37A mutant

Li, Y., Meng, G., Dai, X., Luo, M., Zheng, X.

(2009) J Mol Biology 387: 1277-1285

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	NmrA-like family domain-containing protein 1 (protein)

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3E5M \| pdb_00003e5m	Download File View File

Crystal structure of the HSCARG Y81A mutant

Li, Y., Meng, G., Dai, X., Luo, M., Zheng, X.

(2009) J Mol Biology 387: 1277-1285

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	NmrA-like family domain-containing protein 1 (protein)

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3J32 \| pdb_00003j32	Download File View File

An asymmetric unit map from electron cryo-microscopy of Haliotis diversicolor molluscan hemocyanin isoform 1 (HdH1)

Zhang, Q., Dai, X., Cong, Y., Zhang, J., Chen, D.-H., Dougherty, M., Wang, J., Ludtke, S., Schmid, M.F., Chiu, W.

(2013) Structure 21: 604-613

Released	2013-04-17
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Haliotis diversicolor
Macromolecule	Hemocyanin isoform 1 (protein)

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5U6I \| pdb_00005u6i	Download File View File

Discovery of MLi-2, an Orally Available and Selective LRRK2 Inhibitor that Reduces Brain Kinase Activity

Scott, J.D., DeMong, D.E., Fell, M.J., Mirescu, C., Basu, K., Greshock, T.J., Morrow, J.A., Xiao, L., Hruza, A., Harris, J., Tiscia, H.E., Chang, R.K., Embrey, M.W., McCauley, J.A., Li, W., Lin, S., Liu, H., Dai, X., Baptista, M., Agnihotri, G., Columbus, J., Mei, H., Poirier, M., Zhou, X., Lin, Y., Yin, Z., Sanders, J.M., Drolet, R.E., Kern, J.T., Kennedy, M.E., Parker, E.M., Stamford, A.W., Nargund, R., Miller, M.W.

(2017) J Med Chem 60: 2983-2992

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	81Y, SO4

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6CT0 \| pdb_00006ct0	Download File View File

Atomic Structure of the E2 Inner Core of Human Pyruvate Dehydrogenase Complex

Jiang, J., Baiesc, F.L., Hiromasa, Y., Yu, X., Hui, W.H., Dai, X., Roche, T.E., Zhou, Z.H.

(2018) Biochemistry 57: 2325-2334

Released	2018-04-18
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial (protein)

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6PPB \| pdb_00006ppb	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Human herpesvirus 8 strain GK18
Macromolecule	Unique protein chains: 7

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6PPD \| pdb_00006ppd	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Human herpesvirus 8 strain GK18
Macromolecule	Major capsid protein (protein) Small capsomere-interacting protein (protein) Triplex capsid protein 1 (protein) Triplex capsid protein 2 (protein)

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6PPH \| pdb_00006pph	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Human herpesvirus 8 strain GK18
Macromolecule	Unique protein chains: 7

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6PPI \| pdb_00006ppi	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C12 portal dodecamer structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Human herpesvirus 8 strain GK18
Macromolecule	Portal protein (protein)

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7QAJ \| pdb_00007qaj	Download File View File

ZK002 with Anti-angiogenic and Anti-inflamamtory Properties

Wong, W.Y., Chan, B.D., Muk Lan Lee, M., Dai, X., Tsim, K.W.K., Hsiao, W.L.W., Li, M., Li, X.Y., Tai, W.C.S.

(2023) Front Pharmacol 14: 1227962-1227962

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Deinagkistrodon acutus
Macromolecule	Snaclec clone 2100755 alpha (protein) Snaclec clone 2100755 beta (protein)
Unique Ligands	SO4

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8EZ3 \| pdb_00008ez3	Download File View File

Structure of 3A10 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase

Mou, Z., Lei, R., Wu, N.C., Dai, X.

(2023) Immunity 56: 2621

Released	2023-11-08
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens Influenza A virus (A/Moscow/10/1999(H3N2))
Macromolecule	Heavy chain of influenza virus neuraminidase antibody 3A10 (protein) Light chain of influenza virus neuraminidase antibody 3A10 (protein) Neuraminidase (protein)
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8EZ7 \| pdb_00008ez7	Download File View File

Structure of 1F04 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase

Mou, Z., Lei, R., Wu, N.C., Dai, X.

(2023) Immunity 56: 2621

Released	2023-11-08
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Homo sapiens Influenza A virus (A/Moscow/10/1999(H3N2))
Macromolecule	Heavy chain of influenza virus neuraminidase antibody 1F04 (protein) Light chain of influenza virus neuraminidase antibody 1F04 (protein) Neuraminidase (protein)
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8EZ8 \| pdb_00008ez8	Download File View File

Structure of 3C08 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase

Mou, Z., Lei, R., Wu, N.C., Dai, X.

(2023) Immunity 56: 2621

Released	2023-11-08
Method	ELECTRON MICROSCOPY 2.78 Å
Organisms	Homo sapiens Influenza A virus (A/Moscow/10/1999(H3N2))
Macromolecule	Heavy chain of influenza virus neuraminidase antibody 3C08 (protein) Light chain of influenza virus neuraminidase antibody 3C08 (protein) Neuraminidase (protein)
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8JVB \| pdb_00008jvb	Download File View File

Cryo-EM structure of the Type II secretion system protein from Acidithiobacillus caldus

Liu, R.H., Zhang, K., Feng, Q.S., Dai, X., Fu, Y., Li, Y.

To be published

Released	2024-07-03
Method	ELECTRON MICROSCOPY 2.39 Å
Organisms	Acidithiobacillus caldus SM-1
Macromolecule	Type II and III secretion system protein (protein)