RCSB PDB: Search

6DMN \| pdb_00006dmn	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soaked in 2 mM Ca2+ and 200 mM K+ at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.27 Å
Organisms	Halalkalibacterium halodurans Halalkalibacterium halodurans C-125
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	CA, EDO, GOL, IOD, K

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6DMV \| pdb_00006dmv	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soaked for 40 s in 2 mM Mg2+ and 200 mM K+ at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Halalkalibacterium halodurans Halalkalibacterium halodurans C-125
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG

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6DO8 \| pdb_00006do8	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 80 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.414 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG

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6DO9 \| pdb_00006do9	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Halalkalibacterium halodurans Halalkalibacterium halodurans C-125 unidentified
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOA \| pdb_00006doa	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 480 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.474 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOB \| pdb_00006dob	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 200 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.343 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOC \| pdb_00006doc	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 240 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.496 Å
Organisms	Halalkalibacterium halodurans Halalkalibacterium halodurans C-125
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOD \| pdb_00006dod	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 360 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.535 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOE \| pdb_00006doe	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 420 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.451 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOF \| pdb_00006dof	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 540 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.433 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOG \| pdb_00006dog	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 600 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.285 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOH \| pdb_00006doh	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soak in 0.5 mM EGTA and 200 mM K+ at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.363 Å
Organisms	Halalkalibacterium halodurans C-125 unidentified
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) 5'-R(PCPG)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	CA, EDO, GOL, IOD, K

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6DOI \| pdb_00006doi	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid (1.54 Angstrom wavelength): Soak in 0.5 mM EGTA and 200 mM K+ at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.948 Å
Organisms	Halalkalibacterium halodurans C-125 unidentified
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) 5'-R(PCPG)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	CA, EDO, GOL, IOD, K

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6DOJ \| pdb_00006doj	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 5 mM K+ for 120 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.403 Å
Organisms	Halalkalibacterium halodurans synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) 5'-R(PCPG)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG

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6DOK \| pdb_00006dok	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 25 mM K+ for 120 s at 21 C (dataset 1)

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Halalkalibacterium halodurans synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) 5'-R(PCPG)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG

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6DOL \| pdb_00006dol	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 25 mM K+ for 120 s at 21 C (dataset 2)

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.433 Å
Organisms	Halalkalibacterium halodurans synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) 5'-R(PCPG)-3' portion of intact RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG

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6DOM \| pdb_00006dom	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 50 mM K+ for 120 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.425 Å
Organisms	Halalkalibacterium halodurans synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of cleaved RNA 5'-R(APCPAPUPCPG)-3' (nucleic acid) 5'-R(PCPG)-3' portion of cleaved RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG

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6DON \| pdb_00006don	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 100 mM K+ for 120 s at 21 C (dataset 1)

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.422 Å
Organisms	Halalkalibacterium halodurans synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of cleaved RNA 5'-R(APCPAPUPCPG)-3' (nucleic acid) 5'-R(PCPG)-3' portion of cleaved RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG

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6DOO \| pdb_00006doo	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 100 mM K+ for 120 s at 21 C (dataset 2)

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Halalkalibacterium halodurans synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of cleaved RNA 5'-R(APCPAPUPCPG)-3' (nucleic acid) 5'-R(PCPG)-3' portion of cleaved RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOP \| pdb_00006dop	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C (dataset 1)

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOQ \| pdb_00006doq	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C (dataset 2)

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.422 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid) RNA (5'-R(APCPAPU)-3') (nucleic acid) RNA (5'-R(PCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOR \| pdb_00006dor	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 300 mM K+ for 120 s at 21 C (dataset 1)

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Halalkalibacterium halodurans synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of cleaved RNA 5'-R(APCPAPUPCPG)-3' (nucleic acid) 5'-R(PCPG)-3' portion of cleaved RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOS \| pdb_00006dos	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 300 mM K+ for 120 s at 21 C (dataset 2)

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.318 Å
Organisms	Halalkalibacterium halodurans synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of cleaved RNA 5'-R(APCPAPUPCPG)-3' (nucleic acid) 5'-R(PCPG)-3' portion of cleaved RNA (5'-R(APCPAPUPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	EDO, GOL, IOD, K, MG, PGE

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6DOT \| pdb_00006dot	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 5 mM Mg2+ and 200 mM Rb+ for 40 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.423 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of uncleaved RNA 5'-R(APCPAPUPCPG)-3' (nucleic acid) 5'-R(PCPG)-3' portion of uncleaved RNA 5'-R(APCPAPUPCPG)-3' (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	CL, EDO, GOL, MG, RB

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6DOU \| pdb_00006dou	Download File View File

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 5 mM Mg2+ and 200 mM Rb+ for 120 s at 21 C

Samara, N.L., Yang, W.

(2018) Nat Struct Mol Biol 25: 715-721

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.487 Å
Organisms	Halalkalibacterium halodurans C-125 synthetic construct
Macromolecule	Ribonuclease H (protein) 5'-R(APCPAPU)-3' portion of cleaved RNA 5'-R(APCPAPUPCPG)-3' (nucleic acid) 5'-R(PCPG)-3' portion of cleaved RNA 5'-R(APCPAPUPCPG)-3' (nucleic acid) DNA (5'-D(CPGPAPTPGPT)-3') (nucleic acid)
Unique Ligands	CL, EDO, GOL, MG, RB

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Structure Determination Methodology

Scientific Name of Source Organism

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Experimental Method

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Refinement Resolution (Å)

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Enzyme Classification Name

Symmetry Type

6DMN | pdb_00006dmn

6DMV | pdb_00006dmv

6DO8 | pdb_00006do8

6DO9 | pdb_00006do9

6DOA | pdb_00006doa

6DOB | pdb_00006dob

6DOC | pdb_00006doc

6DOD | pdb_00006dod

6DOE | pdb_00006doe

6DOF | pdb_00006dof

6DOG | pdb_00006dog

6DOH | pdb_00006doh

6DOI | pdb_00006doi

6DOJ | pdb_00006doj

6DOK | pdb_00006dok

6DOL | pdb_00006dol

6DOM | pdb_00006dom

6DON | pdb_00006don

6DOO | pdb_00006doo

6DOP | pdb_00006dop

6DOQ | pdb_00006doq

6DOR | pdb_00006dor

6DOS | pdb_00006dos

6DOT | pdb_00006dot

6DOU | pdb_00006dou