2KIX
Channel domain of BM2 protein from influenza B virus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.8 mM [U-100% 13C; U-100% 15N] BM2, 250 mM [U-100% 2H] dihexanoylphosphocholine, 40 mM sodium phosphate | 93% H2O/7% D2O | 40 | 7.5 | ambient | 305 | |
2 | 3D 1H-15N NOESY | 0.8 mM [U-100% 15N] BM2, 250 mM dihexanoylphosphocholine, 40 mM sodium phosphate | 93% H2O/7% D2O | 40 | 7.5 | ambient | 305 | |
3 | 3D 1H-13C NOESY | 0.8 mM [U-100% 15N] BM2, 250 mM dihexanoylphosphocholine, 40 mM sodium phosphate | 93% H2O/7% D2O | 40 | 7.5 | ambient | 305 | |
4 | 3D HNCA | 0.8 mM [U-100% 13C; U-100% 15N; U-80% 2H] BM2, 250 mM dihexanoylphosphocholine, 40 mM sodium phosphate | 93% H2O/7% D2O | 40 | 7.5 | ambient | 305 | |
5 | 3D HNCACB | 0.8 mM [U-100% 13C; U-100% 15N; U-80% 2H] BM2, 250 mM dihexanoylphosphocholine, 40 mM sodium phosphate | 93% H2O/7% D2O | 40 | 7.5 | ambient | 305 | |
6 | 3D HNCO | 0.8 mM [U-100% 13C; U-100% 15N; U-80% 2H] BM2, 250 mM dihexanoylphosphocholine, 40 mM sodium phosphate | 93% H2O/7% D2O | 40 | 7.5 | ambient | 305 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 750 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | Schwieters, C.D. et al. | |
2 | processing | NMRPipe | Delaglio, F. et al. | |
3 | data analysis | NMRDraw | Delaglio, F. et al. | |
4 | collection | XwinNMR | Bruker Biospin | |
5 | chemical shift calculation | TALOS | Cornilescu, G. et al. | |
6 | structure solution | ProcheckNMR | Laskowski, R. et al. | |
7 | chemical shift assignment | CARA | Keller, R. et al. |