Solution Structure of the C-terminal Domain of Thermosynechococcus elongatus KaiA (ThKaiA180C); Ensemble of 25 Structures
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1.3 mM ThKaiA180C U-15N, 20 mM NaCl, 20 mM phosphate buffer, 95% H2O, 5% D2O | 95% H2O/5% D2O | 20 mM NaCl, 20 mM NaPi | 7.0 | ambient | 323 | |
2 | 4D_13C-separated_NOESY | 1.3 mM ThKaiA180C U-15N,U-13C, 20 mM NaCl, 20 mM phosphate buffer | 100% D2O | 20 mM NaCl, 20 mM NaPi | 7.0 | ambient | 323 | |
3 | 3D 13C-edited, 12C filtered NOESY | 1.0 mM ThKaiA180C U-15N,U-13C, 1.0 mM ThKaiA180C NA-N,Na-C, 20 mM NaCl, 20 mM phosphate buffer | 100% D2O | 20 mM NaCl, 20 mM NaPi | 7.0 | ambient | 323 | |
4 | HACAHB | 1.3 mM ThKaiA180C U-15N,U-13C, 20 mM NaCl, 20 mM phosphate buffer | 100% D2O | 20 mM NaCl, 20 mM NaPi | 7.0 | ambient | 323 | |
5 | HNHB | 1.3 mM ThKaiA180C U-15N, 20 mM NaCl, 20 mM phosphate buffer, 95% H2O, 5% D2O | 95% H2O/5% D2O | 20 mM NaCl, 20 mM NaPi | 7.0 | ambient | 323 | |
6 | BRCTCO/CN | 1.3 mM ThKaiA180C U-15N,U-13C, 20 mM NaCl, 20 mM phosphate buffer | 100% D2O | 20 mM NaCl, 20 mM NaPi | 7.0 | ambient | 323 | |
7 | CBCA(CO)NH | 1.3 mM ThKaiA180C U-15N,U-13C, 20 mM NaCl, 20 mM phosphate buffer, 95% H2O, 5% D2O | 95% H2O/5% D2O | 20 mM NaCl, 20 mM NaPi | 7.0 | ambient | 323 | |
8 | CBCANH | 1.3 mM ThKaiA180C U-15N,U-13C, 20 mM NaCl, 20 mM phosphate buffer, 95% H2O, 5% D2O | 95% H2O/5% D2O | 20 mM NaCl, 20 mM NaPi | 7.0 | ambient | 323 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
Distance geometry, Simulating annealing, Radius-of-gyration, Carbon chemical shift and conformational database potential refinement | The structure is based on 2207 restraints per monomeric unit of which 1740 are NOE restraints. | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 25 |
Representative Model | 13 (closest to the average) |
Additional NMR Experimental Information | |
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Details | This is the oxidized form of the protein. A disulfide bond connects residue C96 of each monomeric unit. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.1 Rev 2002.044.17.08 | Delaglio |
2 | data analysis | PIPP | 4.2.6 | Garrett |
3 | structure solution | XPLOR-NIH | 2.9.1 | Clore |
4 | collection | VNMR | 6.1 Rev. C | Varian Assoc. |
5 | refinement | XPLOR-NIH | 2.9.1 | Clore |