6C6Q
Crystal Structure of the Murine Norovirus VP1 P Domain in complex with the CD300lf Receptor
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth D] | d6c6qd_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
D [auth F] | d6c6qf_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d6c6qa_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
B | d6c6qb_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth D] | V-set_16 | e6c6qD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_16 | ECOD (1.6) |
D [auth F] | V-set_16 | e6c6qF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_16 | ECOD (1.6) |
A | Calici_coat_C_C | e6c6qA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Calici_coat_C_C | ECOD (1.6) |
B | Calici_coat_C_C | e6c6qB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Calici_coat_C_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth F] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
A | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
B | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
B | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth D], D [auth F] | CMRF35-like molecule 1 | 1V-LIKE | Mus musculus (house mouse) | CD300lf*01 | V-LIKE-DOMAIN V-LIKE | RPI | 1V-LIKE | IMGT (202448-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth D], D [auth F] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
PF08435 | Calicivirus coat protein C-terminal (Calici_coat_C) | Calicivirus coat protein C-terminal | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth D], D [auth F] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
C [auth D], D [auth F] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
C [auth D], D [auth F] | IPR013106 | Immunoglobulin V-set domain | Domain |
C [auth D], D [auth F] | IPR003599 | Immunoglobulin domain subtype | Domain |
C [auth D], D [auth F] | IPR050671 | CD300 family immune receptors | Family |
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR004005 | Calicivirus coat protein | Domain | |
IPR013643 | Calicivirus coat protein C-terminal | Domain | |
IPR033703 | Picornavirus/Calicivirus coat protein | Domain |