2F62
Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.5 A resolution with (2-ETHYLPHENYL)METHANOL bound
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d2f62b2 | Alpha and beta proteins (a/b) | Flavodoxin-like | N-(deoxy)ribosyltransferase-like | N-deoxyribosyltransferase | Nucleoside 2-deoxyribosyltransferase | (Trypanosoma brucei ) [TaxId: 5691 ], | SCOPe (2.08) |
B | d2f62b3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Trypanosoma brucei ) [TaxId: 5691 ], | SCOPe (2.08) |
A | d2f62a2 | Alpha and beta proteins (a/b) | Flavodoxin-like | N-(deoxy)ribosyltransferase-like | N-deoxyribosyltransferase | Nucleoside 2-deoxyribosyltransferase | (Trypanosoma brucei ) [TaxId: 5691 ], | SCOPe (2.08) |
A | d2f62a3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Trypanosoma brucei ) [TaxId: 5691 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | N-(deoxy)ribosyltransferase-like | 8040560 | 3001392 | SCOP2B (2022-06-29) |
A | SCOP2 Family | N-deoxyribosyltransferase | 8028181 | 4003738 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | N-(deoxy)ribosyltransferase-like | 8040560 | 3001392 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Nuc_deoxyrib_tr | e2f62B1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: N-deoxyribosyltransferase (From Topology) | T: N-deoxyribosyltransferase | F: Nuc_deoxyrib_tr | ECOD (1.6) |
A | Nuc_deoxyrib_tr | e2f62A1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: N-deoxyribosyltransferase (From Topology) | T: N-deoxyribosyltransferase | F: Nuc_deoxyrib_tr | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.50.450 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 3.40.50.450 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05014 | Nucleoside 2-deoxyribosyltransferase (Nuc_deoxyrib_tr) | Nucleoside 2-deoxyribosyltransferase | Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyses the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007710 | Nucleoside 2-deoxyribosyltransferase | Family | |
IPR051239 | 2'-Deoxynucleoside 5'-phosphate N-hydrolase | Family |