1TD0 | pdb_00001td0

Viral capsid protein SHP at pH 5.5

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1td0a_ All beta proteins beta-clip Head decoration protein D (gpD, major capsid protein D) Head decoration protein D (gpD, major capsid protein D) Head decoration protein D (gpD, major capsid protein D) (Enterobacteria phage P21 ) [TaxId: 10711 ], SCOPe (2.08)
Bd1td0b_ All beta proteins beta-clip Head decoration protein D (gpD, major capsid protein D) Head decoration protein D (gpD, major capsid protein D) Head decoration protein D (gpD, major capsid protein D) (Enterobacteria phage P21 ) [TaxId: 10711 ], SCOPe (2.08)
Cd1td0c_ All beta proteins beta-clip Head decoration protein D (gpD, major capsid protein D) Head decoration protein D (gpD, major capsid protein D) Head decoration protein D (gpD, major capsid protein D) (Enterobacteria phage P21 ) [TaxId: 10711 ], SCOPe (2.08)
Dd1td0d_ All beta proteins beta-clip Head decoration protein D (gpD, major capsid protein D) Head decoration protein D (gpD, major capsid protein D) Head decoration protein D (gpD, major capsid protein D) (Enterobacteria phage P21 ) [TaxId: 10711 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8042457 3001943 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8042457 3001943 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8042457 3001943 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8042457 3001943 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHDPDe1td0A1 A: beta barrelsX: beta-clipH: Head decoration protein D (gpD, major capsid protein D) (From Topology)T: Head decoration protein D (gpD, major capsid protein D)F: HDPDECOD (1.6)
BHDPDe1td0B1 A: beta barrelsX: beta-clipH: Head decoration protein D (gpD, major capsid protein D) (From Topology)T: Head decoration protein D (gpD, major capsid protein D)F: HDPDECOD (1.6)
CHDPDe1td0C1 A: beta barrelsX: beta-clipH: Head decoration protein D (gpD, major capsid protein D) (From Topology)T: Head decoration protein D (gpD, major capsid protein D)F: HDPDECOD (1.6)
DHDPDe1td0D1 A: beta barrelsX: beta-clipH: Head decoration protein D (gpD, major capsid protein D) (From Topology)T: Head decoration protein D (gpD, major capsid protein D)F: HDPDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein Chain: A,CATH (4.3.0)
B2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein Chain: A,CATH (4.3.0)
C2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein Chain: A,CATH (4.3.0)
D2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein Chain: A,CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Head decoration protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR004195Head decoration protein DFamily
A, B, C, D
IPR036630Head decoration protein D superfamilyHomologous Superfamily