9FZ2 | pdb_00009fz2

Crystal structure of Amylase 5 (Amy5) from Ruminococcus bromii covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

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RCSB PDB Mol* Viewer 2.11.4 [4/4/2025, 6:48:47 PM]
Sequence of
     ​S​​D​​S​​S​​S​​S​​K​​S​​D​​S​     ​S​​D​​G​​N​​T​​A​​K​​V​​A​​D​43   ​P​​I​​E​​G​​V​​K​​A​​T​​A​​S​53   ​T​​D​​K​​Y​​R​​N​​Y​​Y​​E​​I​63   ​F​​V​​N​​S​​F​​C​​D​​S​​N​​G​73   ​D​​E​​T​​G​​D​​L​​Q​​G​​I​​I​83   ​S​​Q​​L​​D​​Y​​L​​N​​D​​G​​D​93   ​P​​N​​S​​G​​D​​D​​L​​G​​V​​D​103  ​A​​I​​W​​L​​T​​P​​I​​M​​P​​S​113  ​K​​S​​Y​​H​​K​​Y​​D​​V​​E​​D​123  ​Y​​Y​​N​​I​​D​​P​​D​​F​​G​​T​133  ​L​​D​​D​​F​​D​​K​​L​​I​​E​​E​143  ​C​​H​​K​​R​​G​​I​​N​​V​​I​​L​153  ​D​​L​​V​​L​​N​​H​​A​​S​​S​​K​163  ​N​​P​​L​​F​​T​​K​​A​​V​​E​​E​173  ​V​​A​​D​​N​​K​​L​​D​​G​​N​​A​183  ​E​​Y​​F​​E​​I​​H​​K​​A​​S​​Y​193  ​F​​D​​S​​N​​T​​Q​​T​​I​​S​​L​203  ​G​​N​​G​​Y​​A​​C​​E​​A​​N​​F​213  ​S​​Q​​E​​M​​P​​E​​W​​N​​L​​N​223  ​S​​K​​K​​T​​R​​E​​E​​F​​T​​K​233  ​I​​A​​K​​F​​W​​L​​D​​R​​G​​V​243  ​D​​G​​F​​R​​L​​D​​A​​C​​K​​Y​253  ​F​​T​​N​​K​​E​​T​​D​​G​​T​​E​263  ​F​​L​​K​​W​​F​​Y​​D​​T​​C​​K​273  ​G​​I​​K​​E​​D​​V​​Y​​M​​V​​G​283  ​E​​N​​W​​T​​D​​D​​S​​D​​I​​Q​293  ​E​​L​​Y​​K​​S​​G​​I​​D​​S​​Q​303  ​F​​A​​F​​K​​F​​S​​T​​S​​T​​G​313  ​T​​I​​I​​S​​N​​I​​I​​S​​Q​​G​323  ​G​​M​​A​​T​​A​​K​​K​​I​​M​​N​333  ​Y​​D​​N​​K​​M​​A​​E​​S​​N​​P​343  ​N​​A​​I​​N​​A​​M​​F​​L​​S​​N​353  ​H​​D​​Q​​V​​R​​S​​G​​N​​A​​L​363  ​E​​S​​Q​​G​​L​​S​​S​​Q​​K​​L​373  ​A​​A​​A​​V​​Y​​M​​L​​A​​P​​G​383  ​N​​P​​F​​I​​Y​​Y​​G​​E​​E​​I​393  ​G​​I​​K​​A​​P​​N​​T​​T​​N​​D​403  ​A​​A​​Y​​R​​T​​Q​​M​​V​​F​​D​413  ​S​​E​​N​​L​​P​​D​​I​​Y​​V​​N​423  ​G​​I​​G​​D​​E​​P​​D​​V​​P​​T​433  ​G​​G​​G​​V​​K​​Q​​Q​​L​​A​​D​443  ​K​​D​​S​​L​​L​​N​​Y​​Y​​R​​R​453  ​I​​I​​T​​I​​K​​N​​Q​​N​​P​​E​463  ​I​​A​​R​​G​​R​​I​​V​​G​​T​​Q​473  ​G​​F​​D​​D​​K​​T​​V​​G​​A​​Y​483  ​Y​​V​​E​​Y​​E​​D​​S​​K​​L​​L​493  ​I​​I​​H​​N​​F​​S​​K​​N​​D​​A​503  ​K​​E​​L​​T​​I​​T​​D​​D​​M​​I​513  ​K​​N​​A​​T​​L​​R​​A​​D​​L​​I​523  ​P​​E​​S​​S​​S​​K​​H​​T​​E​​L​533  ​K​​D​​G​​K​​I​​S​​V​​P​​P​​Q​543  ​S​​T​​V​​I​​I​​K​​S​​A​​E​​G​     ​Q​​F​​Y​​L​​N​​E​​H​​H​​H​​H​     ​H​​H​
Type
Asm Id
Dynamic Bonds

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